PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_009775277.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 234aa MW: 25814.4 Da PI: 8.3615

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009775277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	92	137	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_009775277.1 92 GHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 137 59**********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.628	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-11	93	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-15	93	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-15	93	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	94	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.78E-5	101	140	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.9E-4	176	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MPLACFVVKQ ARRPAAAVHQ PRRPAAPNEN QAGCPSPSIF TSSSHVRFIS DTLGHVVHHQ 60 PAGSAPFGLQ AELQKMTAQE IMDAKALAAS KGHSEAERRR RERINNHLAK LRSLLPNTTK 120 TDKASLLAEV IQHVKELKRQ TSLIVETNPV PTEIDELTVD NVSDEFEDGK FVIKASLCCE 180 DRSDLLPDLI KTLKALRLKT LKAEITTLGG RVRNVLFITG DHNYNQEDDL STSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	101	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775277.1	1e-173	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-85	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1U7W5F8	1e-172	A0A1U7W5F8_NICSY; transcription factor bHLH30-like
STRING	XP_009775277.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]