PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774962.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 719aa    MW: 76674.9 Da    PI: 6.6534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16443489455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  XP_009774962.1 443 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 489
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.50E-17435493No hitNo description
Gene3DG3DSA:4.10.280.102.9E-20436497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20436499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MPLSEFLKMA RGKLESGQQK ISSTTHLSSF PENELVELVW ENGQIMMQGQ SSSAKKNPIP  60
NKLPSNASKI GKFGVMDPML NDMPLSVPIG ELDLIQEDEG VPWLGYAADD SLQQDYCSQF  120
LPEISGLTTN EPAGQSEFGL INKRGSSDKM IRDSQSVPIH NAVNFDQRKV SPSSKFSLLC  180
SLAPQKGHAS IPSLGPGVSD IFSSKTSNNS VSVLGDSNQS QVSAGDVKSV KIQKQNMPGS  240
CSSLLNFSHF SRPATFVKAT KLQNITGVLA SDSSALEAKG CKEGENVTNS HNHVNAAAVE  300
DYLSFKKESG LQYPTSAVPS QRESRASGAS FHDRSSRVEQ SDNVFRESNS DNTPGQFTGA  360
KATTDTADGE GNAEHGVVCS SVCSGSSAER GSSDQPHNLK RKSRDNEDSG CPSEDVEEES  420
VGVKKSCPTR GGTGSKRSRA AEVHNLSERR RRDRINEKMR ALQELIPNCN KADKASMLDE  480
AIEYLKTLQL QVQIMSMGAG FCVPPMMFPA GVQHMHAAQM PHFSPMGLGM GMGMGMGYGM  540
GMLEMNGRSS GCPIFPIPSV QGSHFPSPPI PASAAYPGIA VSNRHAFAHP GQGLPMPIPR  600
PSLAPLAGQA STGAAVPLNV ARVGVSVDRP SVPPILDSKN PVHKKNSQIV NNAECSLPIN  660
QTYSQVQATN EVLDKSALVQ KNDQLLDGTD SAANILTNQT DVPGSEAGEF VRKDTATFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447452ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774962.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_009774963.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_016473138.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_016473139.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A1S4A9210.0A0A1S4A921_TOBAC; transcription factor PIF3-like isoform X1
TrEMBLA0A1U7W4K00.0A0A1U7W4K0_NICSY; transcription factor PIF3-like isoform X1
STRINGXP_009774962.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-48phytochrome interacting factor 3