PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774805.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92199.6 Da    PI: 6.5771
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_009774805.1 17 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START173.71.2e-541613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l 
  XP_009774805.1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELL 254
                     7899******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_009774805.1 255 YMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 349
                     ******************************************99988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt+va+l+++++
  XP_009774805.1 350 ESSAVLAQKTTVAALRYLRQ 369
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2891276IPR001356Homeobox domain
SMARTSM003895.3E-161480IPR001356Homeobox domain
SuperFamilySSF466897.7E-171780IPR009057Homeodomain-like
CDDcd000862.35E-161777No hitNo description
PfamPF000463.0E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084826151379IPR002913START domain
CDDcd088753.07E-76155371No hitNo description
SMARTSM002348.1E-43160370IPR002913START domain
SuperFamilySSF559611.33E-37160372No hitNo description
Gene3DG3DSA:3.30.530.201.6E-22160365IPR023393START-like domain
PfamPF018521.8E-52161369IPR002913START domain
PfamPF086703.4E-50695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MASCKDGKTS SVMDNGKYVR YTPEQVEALE RLYHDCPKPS SMRRQQLIRE CPILSHIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRRQ  120
THSTTLATKD TSCESVVTSG QHHLTSQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTTVMD DGSLVVCERS LGNTQNGPSM  300
PPVQNFVRAE ILPSGYLIRP CEGGGSIIHI VDHMNLEAWS VPEVLRPLYE SSAVLAQKTT  360
VAALRYLRQI AQEVSQTNVS NWGRRPAALR ALSQRLSRGF NEALNGLTDE GWSMLGSDGM  420
DDITILVNSS PDKLMGLNLS FANGFSSLSN AVMCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAIKVGPCCL PGTRVGNFGG QVILPLAHTV EHEELLEVIK LEGVGHSPED  540
AIMPRDMFLL QLCSGMDENA VGTSAELIFA PIDASFADDA PLLPSGFRII SLESGKESSS  600
PNRTLDLTSA LETGPAENKV GNDLHTNGGT SRSVMTIAFQ FAFESHMQEN VASMARQYVR  660
SIISSVQRVA LALSPSHLGS HGGLRLPLGT PEAHTLARWI FQSYRCFLGV ELLKSIAEGS  720
ESILKSLWHH SDAIICCSAK AMPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGKKNL  780
CTEFPQIMQQ GFACLQGGIC LSSMSRPISY ERAVAWKVMN EEDSPHCICF MFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869250.0JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774805.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1U7WKM40.0A0A1U7WKM4_NICSY; homeobox-leucine zipper protein ATHB-15-like
STRINGXP_009774805.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]