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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009774483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29073.2 Da PI: 9.273 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.6e-12 | 69 | 120 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR++ Ns + Lr+llP + + kK s ++ ++++YI +L XP_009774483.1 69 KKLNHNASERDRRKKFNSLCSSLRSLLPAtD---HTKKISFPVTVARVIKYIPDL 120 6789*************************55...7777**************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.824 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-13 | 69 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-10 | 69 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-6 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMAVSSPLFS NFGVCLADPK NKKLNTIEAP LSTGIPVHYS SSQPSIVHSE FKNFEEINGD 60 NDHLDGTVKK LNHNASERDR RKKFNSLCSS LRSLLPATDH TKKISFPVTV ARVIKYIPDL 120 KKEVGGLTQK KEDLTLRSIP KKEYSADFNN KQTIIKGGIQ SSLSVISANQ VGNREVIIHI 180 SILKTNKSSF AEAVSELEEE GLLLLNASSF ETLGDRVFYN LHFQAQGTLP INVQILRDKL 240 LSYYEKEDKL LPPWISGSLT T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774483.1 | 0.0 | PREDICTED: transcription factor bHLH100-like isoform X1 | ||||
Refseq | XP_016465934.1 | 0.0 | PREDICTED: transcription factor bHLH100-like isoform X1 | ||||
TrEMBL | A0A1S3ZNR3 | 0.0 | A0A1S3ZNR3_TOBAC; transcription factor bHLH100-like isoform X1 | ||||
TrEMBL | A0A1U7W795 | 0.0 | A0A1U7W795_NICSY; transcription factor bHLH100-like isoform X1 | ||||
STRING | XP_009774483.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-35 | bHLH family protein |