PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774406.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 752aa    MW: 82360.6 Da    PI: 6.459
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.5e-2056111156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q+++Le++F++n++p++++r eL k+l L+ rqVk+WFqNrR+++k
  XP_009774406.1  56 KKKYHRHTPYQIQQLEAAFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 111
                     79999************************************************999 PP
2START169.22.7e-532644891206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+k+a+ ++p+W++      e +n +++ ++f++  +     +++ea +a+g v  ++  lve+l+d++ +W e++     + +t+
  XP_009774406.1 264 ELAFAAMNELLKLAEIGDPLWFRNFdgsgEALNLEDYARSFPPCIGmkpsnFTTEATKATGTVMINCLALVETLMDTS-RWVEMFSsivgRTSTI 357
                     57899******************9999999*************99999**9***************************.**************** PP

                     EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +viss        g lql++ae+q+ls lvp R + f+R+++q+ +g+w++vdvS+d  q+ ++  +   +++lpSg+++++++ng+skv+w+eh
  XP_009774406.1 358 DVISSSstsgsrnGNLQLIQAEFQVLSALVPvRQVKFLRFCKQHAEGVWAVVDVSIDAIQEGSQPREAGNCRRLPSGCIVQDLPNGYSKVIWIEH 452
                     **************************************************************998899999************************ PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++++h+ +r++++sg+ +ga++w atlqrqce+
  XP_009774406.1 453 MEYDENTIHNFYRPFIRSGRGFGAQRWIATLQRQCEC 489
                     ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2130115IPR009057Homeodomain-like
SuperFamilySSF466891.24E-1939113IPR009057Homeodomain-like
PROSITE profilePS5007117.63753113IPR001356Homeobox domain
SMARTSM003898.7E-1655117IPR001356Homeobox domain
CDDcd000862.91E-1756113No hitNo description
PfamPF000461.5E-1756111IPR001356Homeobox domain
PROSITE profilePS5084838.619255492IPR002913START domain
SuperFamilySSF559612.88E-28257489No hitNo description
CDDcd088758.02E-107259488No hitNo description
SMARTSM002342.5E-34264489IPR002913START domain
PfamPF018521.7E-46264489IPR002913START domain
SuperFamilySSF559611.37E-12535745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MEGIGGMGLI GENFDAVAMG RSSREDEYES RSGSDNLDGG ASGDDQDTPL GKSSRKKKYH  60
RHTPYQIQQL EAAFKENPHP DEKARLELGK RLTLESRQVK FWFQNRRTQM KTQLERHENA  120
ILKQENDKLR IENIAMKEAM RSPMCGHCGG QAILGEIHIE EHHLRIENAR LRDELNRICV  180
LANKFLGRPL GSFPGTMPPG MANSGLELAV GRNGFGAMNS VDTALPMGLD FGNGLSSPLT  240
MMSPRPTPSM SNTDVSFDKS MLMELAFAAM NELLKLAEIG DPLWFRNFDG SGEALNLEDY  300
ARSFPPCIGM KPSNFTTEAT KATGTVMINC LALVETLMDT SRWVEMFSSI VGRTSTIDVI  360
SSSSTSGSRN GNLQLIQAEF QVLSALVPVR QVKFLRFCKQ HAEGVWAVVD VSIDAIQEGS  420
QPREAGNCRR LPSGCIVQDL PNGYSKVIWI EHMEYDENTI HNFYRPFIRS GRGFGAQRWI  480
ATLQRQCECL AVITSSAVPS GDSAAVVSPS GRRSIAMLAR RITRNFCGGV CATFYKWEPI  540
QTGTAEDTKL MMRKSIGEPG EPPGIVLSAT RTIWLPVTHQ RLFDFLRNEQ TRSQWDVLSH  600
GGPMHQIVHI AKGQDLGNSI SLFRANAAAS DANQNSMLIL QDSCTDVSGS IVAYAAVDTA  660
EMNVVMSGGD SSCVAFLPSG FAIVPDCFQN SNNGMLEKED NGGSSNGSLL TLGFQILVNS  720
LPAAKLTMES VDTVNALISR TLQGIKTAFQ CN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774401.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A1U7WAZ30.0A0A1U7WAZ3_NICSY; homeobox-leucine zipper protein HDG1-like isoform X1
STRINGXP_009774401.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]