PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774164.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 170aa    MW: 18313.8 Da    PI: 8.7343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.65.9e-10119163554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  XP_009774164.1 119 HIIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 163
                     889**********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-15112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.005114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-12118168No hitNo description
Gene3DG3DSA:4.10.280.102.9E-14119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7119163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAGNPPEGYA AGDDFLEQIL AIPSYSSLPV TDIGACASSK TTSSDSVSGA SQLQQPPQPL  60
GLSLDNGRDD VSRSGAFAVK HVSVPFQGQP TSSTAVTVPH PPAIRPRARA RRGQATDPHI  120
IAERLRRERI SERIKALQEL VPSCNKTDRA AMLDEILDYV KFLRLQVKVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132317e-95BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774164.11e-121PREDICTED: transcription factor UNE12-like isoform X1
TrEMBLA0A1U7WHP71e-120A0A1U7WHP7_NICSY; transcription factor UNE12-like isoform X1
STRINGXP_009774164.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.18e-21bHLH family protein