PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009774018.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 277aa MW: 31392 Da PI: 9.3473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009774018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.2e-12	105	150	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR+++ + f L +llP + +K++Ka+iLe A+ +I++ XP_009774018.1 105 EHLLAERKRRQKMTKLFVSLASLLPGL-----TKMDKASILEGATSFIRQI 150 68889*******************9.....9*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-13	100	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.04	101	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	105	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-13	105	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.93E-10	106	155	No hit	No description
SMART	SM00353	6.4E-12	107	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDDLALIFSH HNHETSRKRL HEDEKAAALA CIISFNTTTP NSSQYYSSTK AEANQQQKQI 60 QCNHTKWGPG RIICTTEANP NTINFSPFVY QNGGTARRTG EQAEEHLLAE RKRRQKMTKL 120 FVSLASLLPG LTKMDKASIL EGATSFIRQI REKTETMKGH LKTKTNNEKG AVPAVKKARN 180 YEHQYSIDMS ILPEIEIRSL EEEVLITVYC KKKYTGIIDE ILGVIQKLHL TIKSSNFMSF 240 GSTAIHITVV AQMKDEFCET TDCLAEKLRQ SILKTLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	114	ERKRRQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774018.1	0.0	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A1U7W5Y1	0.0	A0A1U7W5Y1_NICSY; transcription factor bHLH18-like
STRING	XP_009774018.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14501	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-27	bHLH family protein