PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009773899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 645aa MW: 71763.1 Da PI: 8.1131 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 391 | 428 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_009773899.1 391 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 428 554459******************************88 PP | |||||||
2 | BELL | 119.7 | 1.3e-38 | 254 | 325 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqe q+kkakL+++leeV++rY+qy++q+q+++ssFe+vag+gsak+Yt+lAl+aiS++FrcLkdai++qi XP_009773899.1 254 QRQEFQMKKAKLVTMLEEVEQRYRQYHHQMQIIVSSFEQVAGIGSAKSYTQLALHAISKQFRCLKDAIVGQI 325 699********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.2E-60 | 178 | 323 | IPR006563 | POX domain |
Pfam | PF07526 | 7.5E-48 | 183 | 322 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 369 | 432 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.26E-12 | 372 | 433 | No hit | No description |
SMART | SM00389 | 4.2E-10 | 372 | 436 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-17 | 373 | 439 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-29 | 375 | 438 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.5E-18 | 389 | 428 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MYYQGTSDNI HQAADGNIQT LYLMNPNYIH QGYSNDTQQQ QHQHQHHQQQ IIRHAPLQQA 60 QQHFVGVPLP AVSLHDQNHA QLIHRLWNQS GGGGGNGSHH QSQIIPSSTV VSATSCGGST 120 TDLASQLGFQ RPIIMSPTQQ QQQQGGLSLS LSPQQQQISF NNISAQNQVG SNINRGLDGI 180 SSMVLGSKYL KAAQELLDEV VNVGKCIKGS ELEKGELMNK ESILPLASDV NTSNSGGESS 240 SKQKNGVAEL TTAQRQEFQM KKAKLVTMLE EVEQRYRQYH HQMQIIVSSF EQVAGIGSAK 300 SYTQLALHAI SKQFRCLKDA IVGQIKATSK SLGEEDQSLG EKIEGSRLKF VDHHLRQQRA 360 LQQLGMMQPN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKIMLAKQ TGLTRSQVSN 420 WFINARVRLW KPMVEEMYLE EMKNNQEQNS SSEENKNKNE SNKEKMVSKS SAPQESGTPT 480 EIATSTISTP PTACGSSFQA AQAHNFSFLG SLNMENNTTT KKPRNHDMHN NSPSNILSSV 540 DMAETKARDH QSKKGFNPLM DAAAVYTMGE FGRFNPHEQM AATNFHGNNG VSLTLGLPPN 600 SENLSQQSYQ NTIEFNRMSY ENIDFQNKRF PSQILPDFVA GNLGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 378 | 436 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 378 | 436 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF406697 | 0.0 | AF406697.1 Solanum tuberosum BEL1-related homeotic protein 5 (Bel5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773899.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_009773900.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A1U7WGY1 | 0.0 | A0A1U7WGY1_NICSY; BEL1-like homeodomain protein 1 | ||||
STRING | XP_009773899.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-104 | BEL1-like homeodomain 1 |