PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773823.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 284aa    MW: 32288.4 Da    PI: 8.8433
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.61.5e-33521921128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksg 81 
                     lp+G++F+P+d+el+ e+L++kv+ +       ++++ + ++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+       ++ 
  XP_009773823.1  52 LPAGVKFDPSDQELL-EHLEAKVRLDAhklhplIDEFIHsLEGEnGICYTHPEKLP-GVSQDGIIRHFFHRPSKAYTTGTRKRRKvdtdieGNET 144
                     799************.99****999884554332222222433336**********.554555577******************74554443388 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v++ kg+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_009773823.1 145 RWHKTGKTRPVVV-KGKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 192
                     8************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3847211IPR003441NAC domain
PROSITE profilePS5100533.13652211IPR003441NAC domain
PfamPF023652.5E-1553192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTCINDSVNE QSISINVTNE STTNTTKTRT CPSCGHLIKS EEKAGIHNLP GLPAGVKFDP  60
SDQELLEHLE AKVRLDAHKL HPLIDEFIHS LEGENGICYT HPEKLPGVSQ DGIIRHFFHR  120
PSKAYTTGTR KRRKVDTDIE GNETRWHKTG KTRPVVVKGK VKGHKKILVL YTNYGKQRKP  180
EKTNWVMHQY HLGDNEDEKE GELVVSKVFY QTQPRQCGNS LLRNNCPPPS IRANIGQASQ  240
FRDNTTFVQC FNNPTLISFD QYEHNNRPTP RLPNFNLPDA SFIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-104HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773823.10.0PREDICTED: NAC domain-containing protein 8-like
RefseqXP_016453133.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-115NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1S3YM170.0A0A1S3YM17_TOBAC; NAC domain-containing protein 73-like
TrEMBLA0A1U7W5D40.0A0A1U7W5D4_NICSY; NAC domain-containing protein 8-like
STRINGXP_009773823.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-103NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]