PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 863aa MW: 98321.9 Da PI: 8.3838 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.7 | 5.3e-25 | 86 | 192 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+eYAk++GF +++s++s+ +g +++++fvCs++g+++e +++ ++k r +r+ ++t+Cka+l+vk+++dg+w + XP_009772350.1 86 SFYKEYAKSIGFFSIIKASRRSRISGIFIDAKFVCSRYGSKQEPSTSvtepvpsadgagsipvrRKKGRINRSWSKTDCKACLHVKRRSDGRWII 180 5******************************************9999***************99999999************************* PP FAR1 79 tkleleHnHela 90 ++++eHnHe + XP_009772350.1 181 RTFVKEHNHETF 192 *********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-22 | 86 | 192 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.8E-29 | 310 | 404 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.41 | 590 | 626 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-7 | 596 | 625 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-6 | 601 | 628 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 863 aa Download sequence Send to blast |
MVIDLEHPSG DQHKEKEDCG HHICGATATA SKSVCLDRGN AGPSWNEGTS NGTYILPNAD 60 SLAVNCYRGL EPHDGMEFDS KEDAFSFYKE YAKSIGFFSI IKASRRSRIS GIFIDAKFVC 120 SRYGSKQEPS TSVTEPVPSA DGAGSIPVRR KKGRINRSWS KTDCKACLHV KRRSDGRWII 180 RTFVKEHNHE TFPDRTNYLR GHRNTDLGKN GADAFHSICG RTKKTYVTMS RQSGVMKKVE 240 KQKNVGTKSS PQSLALDEGD AQVMLEHFLY MQDENPNFFY AMDLNQEQRL RNVFWVDAKG 300 RIDYSNFSDV VLVDTTYIKN DYKLHFVPFI GVNHHCQSIL LGCGLIANES KSTFVWLMRA 360 WLRAMGGQAP KVILTDQDNT LEEVIAEVLP DCCHCFCLWH VLSNIQEKLG HVIRQHEDFL 420 SKFNKCILRS ATNELFEKRW WKVVDRFDLR NDLWIKSLYK DRLRWVPTFM NNIFLAGMST 480 MQRSESVSSL LEKCMLCRTT LKEFLDQYKK LLREKCQEEA SADSETRHKQ PGLKSPSPFE 540 KQMSTLYTHT IFKKFQAQVL GVVACHPKKE SDDGAAATYR VQDFEENQEF VVVRSEKTSD 600 ASCSCHLFEY NGFLCRHVMI VLQMAGVHNI PSKYILSRWT KGAKSREKMR EVNLVDSRVQ 660 RYNDLCQRAF ELGDEGSLSQ ESYNIVFNAL ENFLRRCEAV NDPNLNESEP CFPKNQVFID 720 GNNPSKSNGK NIARKEKVGQ SGLGEPTVDY PFQSHSAMQP MGQINARFPA PGGYYSSPQI 780 IQGVFLPFGA GTIEYKYPSL WQPTKHAGAG TVEYNCFNCR LPLSLSTYIP WTGTIYTYVK 840 DYLLCVNISL PVALLKWQIA YFA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772350.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X4 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1U7WDQ1 | 0.0 | A0A1U7WDQ1_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X4 | ||||
STRING | XP_009772328.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |