PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772330.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 200aa    MW: 23752.3 Da    PI: 9.7569
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34311242102
                     HHHHHHHHHC..TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeile..deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                     Fl k+y++le  +ee+++++sw+ +g+ fvv+ + ef++++LpkyFkh+nf+SFvRQLn+YgFkkv +++         weF+h++Fkkg ++ll
  XP_009772330.1  31 FLLKTYDLLEeqEEENNKVVSWNGEGSGFVVWCPAEFSEHMLPKYFKHNNFSSFVRQLNTYGFKKVASKR---------WEFQHDKFKKGCRQLL 116
                     9********955568999*************************************************999.........**************** PP

                     XXXXXXXX CS
    HSF_DNA-bind  95 ekikrkks 102
                     e+i rkk 
  XP_009772330.1 117 EEITRKKC 124
                     *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-3525116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-4327122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-2828122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.4E-3031122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-133154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-137183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-138496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MATHAIPAPA DDRNISRKIG RSLRTKCPAP FLLKTYDLLE EQEEENNKVV SWNGEGSGFV  60
VWCPAEFSEH MLPKYFKHNN FSSFVRQLNT YGFKKVASKR WEFQHDKFKK GCRQLLEEIT  120
RKKCEPSAFP IYLKPTERNT FAIKEENTTR QLLMEENKNL RKERLELQMQ IAHFQKLEMK  180
LLECLSQYVE NSQNKTRRLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A2e-19271227110Heat shock factor protein 2
5hdk_B2e-19271227110Heat shock factor protein 2
5hdk_C2e-19271227110Heat shock factor protein 2
5hdk_D2e-19271227110Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772330.11e-148PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A1U7WDN11e-147A0A1U7WDN1_NICSY; heat stress transcription factor B-2a-like
STRINGXP_009772330.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-40heat shock transcription factor B2A