PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772103.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 540aa    MW: 60115.6 Da    PI: 8.1698
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.2e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_009772103.1  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                    ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-11545No hitNo description
CDDcd002021.49E-16654No hitNo description
PfamPF003209.9E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.8E-9284372IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDYLEDY  60
RVSRVKHMSL KNKEPKLLKR KQNHDNTEVR TPPDYNQGFL KGLDEDTSNR SSSGSAISNT  120
ESCAQFGSTE ASDLTGHAQS NIWDTTVPSR KRTCISRPKQ SSVEKLTKDL YTILHEQQSS  180
CFSGSSEEDL LFASDKPMVS VEIGHGSVLI RHPNSIGRDE ESEVSSLSVD NKRHYVNEAY  240
SRFSTPPVNI NKGVYLPNLG TERIKKPTSQ GMEQDKIKRD KDRLEKLQIL GQHNSPLCHI  300
DLKDVLNYEE FVRHFSSDEQ QQLLKYLAPV DSFAPPDSLK SMFESSHFEE NLSSFQKLLA  360
EGVFDNSLGV KVEDLRILKR LILCYLTKSK WVEKYNLLKE TKCKSSTNGS EVAGGPNAIG  420
IGHSVNVKRP LEGHHAKYAG AKKAMKSPNR VVMKSSYEQK ELIDNDSSCF SPKNLFALPC  480
NSSPMLDSLH FANGSSDQEL LLDVPSNSSF PQAELLVPTS SFAAQASTSS SSVYPHAVRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-153HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772103.10.0PREDICTED: GATA transcription factor 26
SwissprotQ8W4H11e-151GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1U7W0H40.0A0A1U7W0H4_NICSY; GATA transcription factor 26
STRINGXP_009772103.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-153GATA transcription factor 26