![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009772007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 228aa MW: 25685.6 Da PI: 6.7886 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.1 | 8.6e-33 | 52 | 107 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 rY+eClkNhA+ +Gg+avDGCgEf+p+ geegt +alkCaAC+CHRnFHR+eve e XP_009772007.1 52 PRYRECLKNHAVGIGGQAVDGCGEFLPA-GEEGTLDALKCAACNCHRNFHRKEVEGE 107 69*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-23 | 36 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.3E-30 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.2E-29 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.19 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.07E-20 | 150 | 226 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-31 | 155 | 227 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.6E-24 | 165 | 221 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MEFDEEHEDQ EDEIANISQI PATTENNYQE FGEGGPISQA AATLRKNNVP SPRYRECLKN 60 HAVGIGGQAV DGCGEFLPAG EEGTLDALKC AACNCHRNFH RKEVEGEILN FHHTTPPPIL 120 HHPAHHYPYR YLQRPLALPS VSSREDIEDY VSNPTSSGGG GSGSRKRFRT KFTQDQKEKM 180 FAFAEGLGWR IQKENDAAVQ QFCAETNIRR QVFKVWMHNN KHTLGKKP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-26 | 166 | 223 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772007.1 | 1e-173 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_016482443.1 | 1e-173 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 5e-69 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9SB61 | 5e-69 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1S4B0X3 | 1e-172 | A0A1S4B0X3_TOBAC; zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A1U7VW40 | 1e-172 | A0A1U7VW40_NICSY; zinc-finger homeodomain protein 2-like | ||||
STRING | XP_009772007.1 | 1e-173 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-63 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|