PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771992.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 507aa    MW: 56875.1 Da    PI: 4.2823
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.71.2e-322610450128
             NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++k+++ ewyfFs  dkky +g r+nrat++gyWk+tgkd++v+++k+++vg+kktLv+++grapkg++t+Wvmheyrl
  XP_009771992.1  26 RLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYWKTTGKDRAVHRNKSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 104
                     4566778**********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.0331127IPR003441NAC domain
SuperFamilySSF1019415.49E-3827127IPR003441NAC domain
PfamPF023652.0E-1533104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSNCEPLAVG DFSAINEKLA ITCKSRLKTR DLEWYFFSVL DKKYGNGART NRATEKGYWK  60
TTGKDRAVHR NKSQVVGMKK TLVYHSGRAP KGQRTNWVMH EYRLIDEELD RAGIPQDAFV  120
VCRVFQKSGA GPKNGEQYGA PFIEEEWEED ELQVLPKDEA AEEFVFDDDI YLDGIELDQI  180
LGTETTLNSA PLPLDYCYGE NGSSEETNNS SDAQNWLQQP DELKPIDLAV QQNVDVDPVM  240
HEYIGESSKN VNSEDVDYLL HEPTVNATDD LQFKEEAFLE ANDLSNPIEV DSSGFDMLEE  300
YLTFFDANDD FQHMGFDPSV LFGNDDQISD QALLAEKNIG EVTQQFIAPN EGLGENKNDF  360
ASSSKLEPTK FGSDRQYPFM KKASQMLGNI HAPPAFASEF PTKDATLRLN SLSQSSSSVQ  420
VTAGFQIRDT TVGSNGTGWP LGKYADYNII LSFGISRRSD DSAMESFYSI HPGKTTSIIS  480
RGWFYYLFFS FLMLCMSFKI GTIICAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-273313372171NO APICAL MERISTEM PROTEIN
1ut4_B2e-273313372171NO APICAL MERISTEM PROTEIN
1ut7_A2e-273313372171NO APICAL MERISTEM PROTEIN
1ut7_B2e-273313372171NO APICAL MERISTEM PROTEIN
3swm_A2e-273313375174NAC domain-containing protein 19
3swm_B2e-273313375174NAC domain-containing protein 19
3swm_C2e-273313375174NAC domain-containing protein 19
3swm_D2e-273313375174NAC domain-containing protein 19
3swp_A2e-273313375174NAC domain-containing protein 19
3swp_B2e-273313375174NAC domain-containing protein 19
3swp_C2e-273313375174NAC domain-containing protein 19
3swp_D2e-273313375174NAC domain-containing protein 19
4dul_A2e-273313372171NAC domain-containing protein 19
4dul_B2e-273313372171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137470.0BT013747.1 Lycopersicon esculentum clone 132610F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771992.10.0PREDICTED: NAC domain-containing protein 78-like isoform X2
RefseqXP_016454401.10.0PREDICTED: NAC domain-containing protein 78-like isoform X2
TrEMBLA0A1S3YQB40.0A0A1S3YQB4_TOBAC; NAC domain-containing protein 78-like isoform X2
TrEMBLA0A1U7VW250.0A0A1U7VW25_NICSY; NAC domain-containing protein 78-like isoform X2
STRINGXP_009771991.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.13e-95NAC domain containing protein 53