PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009771720.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 466aa MW: 51762.7 Da PI: 6.6713

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009771720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.4e-08	331	378	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009771720.1 331 SHSLAERVRREKISQRMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 378 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.69E-10	325	382	No hit	No description
SuperFamily	SSF47459	7.2E-17	325	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-16	327	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.256	327	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-6	331	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-9	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MDKDYFSNGG IPPPLQFEPK IPLNSLFSPH ELNSISDQYT QFDSALSSMV SSPVASNSIN 60 SNDNFALHEL IGKLGTICSS PSPQLTDYAV NYDHINNSDS TMTSCYTTPL NSPPKLRDNI 120 PNFDISVPIN LPQFPTFSAN PEFSHRAAKF SYFGSCSFNG RTSQFGTELS HRSRNEPMGS 180 VKLSRISSSP SLVLQNKNSG QTQEEMMFEN LDLGKNSGPN NANSNEKCSI SKQIPSGEMG 240 LKTSNVMNSR KRKTVSRGKG KSYNGAEEAE DGTKEKRSKS TEGNGKKNGT VKMEETNGSE 300 CDETEKEGKE EQKPTKDWIH VRARRGQATD SHSLAERVRR EKISQRMKFL QDLVPGCNKV 360 TGKALMLDEI INYVQSLQRQ VEFLSMKLAS VNPRMDFHID NFLSKDICQP NGSFSQQVFP 420 LDGFCENLTQ LHTICEDELQ TIVQMGFSHQ DLTLQSQAFP APNSTS

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MDKDYFSNGG IPPPLQFEPK IPLNSLFSPH ELNSISDQYT QFDSALSSMV SSPVASNSIN  60
SNDNFALHEL IGKLGTICSS PSPQLTDYAV NYDHINNSDS TMTSCYTTPL NSPPKLRDNI  120
PNFDISVPIN LPQFPTFSAN PEFSHRAAKF SYFGSCSFNG RTSQFGTELS HRSRNEPMGS  180
VKLSRISSSP SLVLQNKNSG QTQEEMMFEN LDLGKNSGPN NANSNEKCSI SKQIPSGEMG  240
LKTSNVMNSR KRKTVSRGKG KSYNGAEEAE DGTKEKRSKS TEGNGKKNGT VKMEETNGSE  300
CDETEKEGKE EQKPTKDWIH VRARRGQATD SHSLAERVRR EKISQRMKFL QDLVPGCNKV  360
TGKALMLDEI INYVQSLQRQ VEFLSMKLAS VNPRMDFHID NFLSKDICQP NGSFSQQVFP  420
LDGFCENLTQ LHTICEDELQ TIVQMGFSHQ DLTLQSQAFP APNSTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	253	SRKRKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771720.1	0.0	PREDICTED: transcription factor bHLH78-like
TrEMBL	A0A1U7WBW7	0.0	A0A1U7WBW7_NICSY; transcription factor bHLH78-like
STRING	XP_009771720.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-68	bHLH family protein