PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771718.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 466aa    MW: 53413.2 Da    PI: 8.6491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.4e-131294398
                    EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    k      ++k+g l +p  f+ ++ + + + +++  +    +++W vk+  ++++    l++GW++F+++++L+ gD++vF ++g++ef   v++f 
  XP_009771718.1 12 KPI--MPYFKNG-LKIPLGFL-KYlK-D-HDHIEHAILRMGSKKWLVKV--NGRR----LEEGWENFAEEHDLQLGDMLVFGHEGDMEF--EVSIFH 94
                    555..3466666.*******9.6733.2.3566778888899*******..8888....************************999999..888875 PP
2B347.43.3e-15179267598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++  +++++ +pk fa e+g+++++  t+ ++d + rsWe++l    ++g++++++ W +F+ an LkegD ++F+  + +++++ +k+++
  XP_009771718.1 179 TVKPHWISKHLMHVPKLFACENGLSNRK-CTIAIRD-EQRSWEFRL--YSCGGSTFIGGEWHKFCAANFLKEGDQIMFEIFS-KGEKPILKFCD 267
                     5677888999************999765.5999999.779******..999999*************************655.88889999997 PP
3B350.63.5e-16349430588
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     +++++ l+ g l +pk+fa ++g+k++++  l+++de+ rsW+++l  + ++ ++++++G ++F  +n LkegD ++F+++ + 
  XP_009771718.1 349 TIRPYCLTYGFLNVPKHFACANGLKPNKKCILIIRDERQRSWTLRL--SVCKTQVYIGDGLRKFIADNCLKEGDRIMFEVVTNG 430
                     56789999999***********************************..999999*************************87643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-20398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603796IPR003340B3 DNA binding domain
CDDcd100171.96E-13893No hitNo description
SMARTSM010192.8E-121096IPR003340B3 DNA binding domain
PfamPF023621.3E-91694IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-15173266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15173266IPR015300DNA-binding pseudobarrel domain
CDDcd100176.35E-12174267No hitNo description
PROSITE profilePS5086310.306175268IPR003340B3 DNA binding domain
SMARTSM010191.8E-11176269IPR003340B3 DNA binding domain
PfamPF023621.5E-13178267IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-17343437IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-17343437IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.348345440IPR003340B3 DNA binding domain
SMARTSM010192.7E-14346440IPR003340B3 DNA binding domain
PfamPF023625.5E-14349432IPR003340B3 DNA binding domain
CDDcd100176.12E-11358425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MKISPKKPHF FKPIMPYFKN GLKIPLGFLK YLKDHDHIEH AILRMGSKKW LVKVNGRRLE  60
EGWENFAEEH DLQLGDMLVF GHEGDMEFEV SIFHSNQCER EYEEEQKVHN VEETSKKFEF  120
KDLRGNASLR PEGNKTNLDA ERVSTQEKLN SNITSSHEVF PDVEATKDMP LGRPHLITTV  180
KPHWISKHLM HVPKLFACEN GLSNRKCTIA IRDEQRSWEF RLYSCGGSTF IGGEWHKFCA  240
ANFLKEGDQI MFEIFSKGEK PILKFCDLRG EVSLQPEGKK TNLDTERVST QDLRGNASLQ  300
PEGKKANLHA KRVSSEEKPS PSIKSPNKAS ADAKAAAHEP FGHSKFVCTI RPYCLTYGFL  360
NVPKHFACAN GLKPNKKCIL IIRDERQRSW TLRLSVCKTQ VYIGDGLRKF IADNCLKEGD  420
RIMFEVVTNG ETPIWKFQVV TSGKDSDEEE SRQVFSSSMK IVFLFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771718.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A1U7VZC00.0A0A1U7VZC0_NICSY; B3 domain-containing protein REM5-like
STRINGXP_009771718.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.14e-38B3 family protein