PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009771678.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 633aa MW: 70302.2 Da PI: 5.8447 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 73.3 | 3.6e-23 | 203 | 256 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++Wt+ LH++F+ea++ + G +k +Pk+il+ mkv+gLt+e+v+SHLQkYR+ XP_009771678.1 203 KAKVVWTSSLHNKFLEAIRDI-GFDKVVPKKILDQMKVPGLTRENVASHLQKYRI 256 6799*****************.********************************6 PP | |||||||
2 | Response_reg | 71.1 | 4.6e-24 | 13 | 121 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vdD+ + +++++ +l+k +y +v +++++ +al +l+ k +Dl+++D+ mp+m+G+el + i+ e +lp+++++a ++e ++l+ l+ G XP_009771678.1 13 ILVVDDDVVCLSIVAMILKKCKY-QVMTVKHPMDALSILRIKGgsFDLVVVDVHMPDMNGFELQQVITDEF-ELPVVLMSADDKEGTILKGLDGG 105 89*********************.***************666666**********************9999.9********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a fl+Kp++ ++l++ XP_009771678.1 106 AAFFLVKPISVDDLRD 121 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 6.4E-32 | 10 | 134 | No hit | No description |
SuperFamily | SSF52172 | 1.35E-29 | 10 | 127 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.5E-24 | 11 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 35.751 | 12 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.0E-20 | 13 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.64E-22 | 14 | 124 | No hit | No description |
PROSITE profile | PS51294 | 9.66 | 200 | 259 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-17 | 201 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 202 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-23 | 203 | 256 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.4E-6 | 206 | 255 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MEVETLINKS ISILVVDDDV VCLSIVAMIL KKCKYQVMTV KHPMDALSIL RIKGGSFDLV 60 VVDVHMPDMN GFELQQVITD EFELPVVLMS ADDKEGTILK GLDGGAAFFL VKPISVDDLR 120 DLWQYTLLQK KKGKRVVLEE INCLEKSSNC NKKSLHEVGE SASSINENYY QHIKKEKSKR 180 KPARTQRNAD KDNSGNSAAL FKKAKVVWTS SLHNKFLEAI RDIGFDKVVP KKILDQMKVP 240 GLTRENVASH LQKYRIFLER VSDACCRIQA ADTNLAIKAV QSTFASGMLS QEKIGLQKQF 300 SENTTNPRSL IHTANNGSSS FRTQQTRQAI PLGYEQAQLF LNEGILGNIT HSNEIPLYKA 360 NQLTSTMKAN NYQTGTSAYE DISSQLMNGT TSTQVRRMLS RVPANRLSDR NLLALGTNGI 420 TKHATLNGNL NFLHDGFADD QCGTNFTQNN DADEASTLFA GLMNFIGKSQ HDSEQCLAQE 480 ASSSVGFDGE KQCSAILSDH IDEDTSMQLP SFVNDVCRGQ EVDATLNPVC NFSEFHNINA 540 TQQSRGIGDL SVPFVNQGNV QPHQQSGEDY LQWFGQIPFK QQEHIGHSEP AEDGMSQLHN 600 VFSYPTEQCK NEQFLELVLA SSPYEGDQNP DGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-18 | 202 | 262 | 4 | 64 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149488 | 2e-36 | AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771678.1 | 0.0 | PREDICTED: putative two-component response regulator ARR13 isoform X1 | ||||
TrEMBL | A0A1U7VZ80 | 0.0 | A0A1U7VZ80_NICSY; putative two-component response regulator ARR13 isoform X1 | ||||
STRING | XP_009771678.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3290 | 20 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-51 | response regulator 2 |