PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009771544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 35507.7 Da PI: 6.1741 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.6 | 2.6e-14 | 131 | 178 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r+ ++f L +l+P++ kKl+Ka++L A++YIk+L+ XP_009771544.1 131 QDHVVAERKRRERLTQRFIALSTLIPNL-----KKLDKASVLGDAIKYIKQLE 178 56999***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.12 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-12 | 131 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-18 | 132 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.30E-14 | 133 | 182 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-17 | 133 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-16 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MDMSSATWWS EMERTNMNDH SFINNNHSQM MTPFNELPFN KPFSSCNYGY SSSPSANTTT 60 VATNHFENLN YTSVKTELTS GTTLNFSSSV STDSDDFGDS QNLIQALGFG AADTTTTTQK 120 KSYNRTSLQA QDHVVAERKR RERLTQRFIA LSTLIPNLKK LDKASVLGDA IKYIKQLEEQ 180 VKTLEEKAKN CSEESVVAVK RARVLSSYDD YSSSSDENSS ISTDRSFPDI EVRVSDGNFM 240 ISIYCKKQSG IIKEIYNEVE KLHLSIISSS VMPFGYNTTH MTIIALIDYK LSMTPNHVAN 300 RIRAVMMKEE DTTITA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 132 | 194 | 8 | 73 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 132 | 194 | 8 | 73 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 132 | 194 | 8 | 73 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 132 | 194 | 8 | 73 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 132 | 194 | 8 | 73 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 132 | 194 | 8 | 73 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 132 | 194 | 8 | 73 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 132 | 194 | 8 | 73 | Transcription factor MYC2 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 141 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771544.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1U7WA60 | 0.0 | A0A1U7WA60_NICSY; transcription factor bHLH18-like | ||||
STRING | XP_009771544.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4508 | 14 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-45 | bHLH family protein |