PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009771453.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 442aa MW: 48857 Da PI: 8.6523 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.5e-16 | 232 | 278 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq XP_009771453.1 232 VHNQSERRRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVINYLKQLQ 278 6*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.752 | 228 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-19 | 231 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-13 | 232 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.27E-16 | 233 | 282 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-18 | 233 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-17 | 234 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MSHCTVPTWN PRHQRQEQAV EAEEPNKYPH VHNQQNQINH FMPMSKCEKV AELTWENRHG 60 VGGILSMSQT KPTLGRAGDT LESIVHQATY HGQINQTSIQ NYDQNQNLKI GMCVGKWGES 120 SQHQMAAPPG GATVLAKKRM RSESDPKYGG KLVGEDEYAE LSACASASAT FCRENDTTMV 180 TWPSFDESSR SIKSKTSCDE DSACHDGGSE NKEEEHETKR SNSSRRSRAA VVHNQSERRR 240 RDRINQKMKA LQRLVPNASK TDKASMLDEV INYLKQLQAQ VQLMNSVRNM APQMMMPLGM 300 HQHIQMSLLA RMGMGVGLGM GMGMFDMTAL ARAAAAAAHQ SLTTHPLIHT NPIANPTNPF 360 IPPAFAMPAA PAIPSAAQAN TVGRATTAVT PPPYSAFPTQ PMDMEYFNNM AALYRQQANN 420 HSTQTTGYKL NQGNLNIQGQ RE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 241 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 3e-81 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771453.1 | 0.0 | PREDICTED: transcription factor UNE10-like isoform X1 | ||||
TrEMBL | A0A1U7VYL0 | 0.0 | A0A1U7VYL0_NICSY; transcription factor UNE10-like isoform X1 | ||||
STRING | XP_009771453.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5437 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-35 | bHLH family protein |