PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009771409.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 365aa MW: 41426.6 Da PI: 4.7724

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009771409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.8	3.9e-22	274	323	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+d + y +lpi+ AAk+L++c+Tv+K+ CR+ G+ RWP+Rkiks+ XP_009771409.1 274 GKLRLKDFAGYLHLPIEVAAKKLNICPTVMKKVCRRDGLLRWPYRKIKSI 323 68999*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.438	263	343	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-19	276	323	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDNPTAIVPY HDPFDDSCSI DQISLFDENP TIGLPKSSWN QEPFSFDPTI LKSDNDFGVY 60 DPFDDPIFLD IPYECKNNLV ENSTNTEAGV FATNYCSISQ DRVFENKSHV SVWPVSSSTS 120 MCTNNCQILR EITHSNGLQI SKLDIFGTLG RISHAVLEKY TRDFSSQSHE SSQIFDFSKD 180 STSSVKQFLV QYFEACKLEG YILLQDPFCD FYEALGVGSD DGDSLDIDSL LQLSPTTSRD 240 CQMNQQEIKN EGEVNCNDMR YEKIPLSAQR ERTGKLRLKD FAGYLHLPIE VAAKKLNICP 300 TVMKKVCRRD GLLRWPYRKI KSIRRKISKR EKSLSSNDVE ERASAKADIA KLEEELAKIF 360 EAFVG

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDNPTAIVPY HDPFDDSCSI DQISLFDENP TIGLPKSSWN QEPFSFDPTI LKSDNDFGVY  60
DPFDDPIFLD IPYECKNNLV ENSTNTEAGV FATNYCSISQ DRVFENKSHV SVWPVSSSTS  120
MCTNNCQILR EITHSNGLQI SKLDIFGTLG RISHAVLEKY TRDFSSQSHE SSQIFDFSKD  180
STSSVKQFLV QYFEACKLEG YILLQDPFCD FYEALGVGSD DGDSLDIDSL LQLSPTTSRD  240
CQMNQQEIKN EGEVNCNDMR YEKIPLSAQR ERTGKLRLKD FAGYLHLPIE VAAKKLNICP  300
TVMKKVCRRD GLLRWPYRKI KSIRRKISKR EKSLSSNDVE ERASAKADIA KLEEELAKIF  360
EAFVG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771409.1	0.0	PREDICTED: uncharacterized protein LOC104221948
TrEMBL	A0A1U7W9T0	0.0	A0A1U7W9T0_NICSY; uncharacterized protein LOC104221948
STRING	XP_009771409.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	4e-07	Nin-like family protein