PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771224.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 91aa    MW: 10415.2 Da    PI: 10.0956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000755981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ Cg+ F    +L  H+r+H
  XP_009771224.1 59 HECSFCGEEFAFGQTLGGHMRKH 81
                    78********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.5E-61135IPR007087Zinc finger, C2H2
SMARTSM003557.11134IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.67E-75684No hitNo description
Gene3DG3DSA:3.30.160.604.6E-45783IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.0E-65984IPR007087Zinc finger, C2H2
SMARTSM003550.535981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1385986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MQAKSGRSKI FECKTCKKKQ FDSFQALGVH RASHKNTVIK LMLMTTFPNE LPTVKPKKHE  60
CSFCGEEFAF GQTLGGHMRK HCDELNKLNQ Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771224.13e-62PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX851e-16ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A1U7W9926e-61A0A1U7W992_NICSY; zinc finger protein ZAT8-like
STRINGXP_009771224.11e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-23C2H2 family protein