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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009770986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 237aa MW: 26400.6 Da PI: 10.2669 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 84.7 | 1.4e-26 | 72 | 126 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR+ Rak e e+kl k rkp+lh SRh hA+rRpRg gGrF XP_009770986.1 72 GPIFVNAKQYHGILRRRKFRAK-EMENKL-LKPRKPFLHLSRHLHAMRRPRGGGGRF 126 69*******************9.566999.9*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-29 | 69 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 30.989 | 70 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.5E-23 | 73 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.7E-20 | 73 | 95 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.7E-20 | 103 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
SQSGDSKSSE KLSNVVDGVS MKSSNTDYQG HFEPLIYAKY PYGEKSLGLF STYGSQVSGR 60 VMLPLNLTSD EGPIFVNAKQ YHGILRRRKF RAKEMENKLL KPRKPFLHLS RHLHAMRRPR 120 GGGGRFLNTR KMNGSTNDGT TKTSNRKSQP TGSQNSEVLQ SDHIGNFNSP KETTSRMSCN 180 SSEVTSFYSR GDLDTYPVHN PRPSVQAFFY MMNTGHDILM GSKWGSAAAD SCCNLNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 3e-15 | 71 | 129 | 2 | 62 | HAPB protein |
4g92_A | 3e-15 | 71 | 129 | 2 | 62 | HAPB protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016508495.1 | 1e-178 | PREDICTED: nuclear transcription factor Y subunit A-10-like, partial | ||||
TrEMBL | A0A1S4D4Z1 | 1e-177 | A0A1S4D4Z1_TOBAC; nuclear transcription factor Y subunit A-10-like | ||||
STRING | XP_009770986.1 | 1e-177 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3706 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 2e-44 | nuclear factor Y, subunit A10 |