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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009770731.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 434aa MW: 49535 Da PI: 5.9809 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 150 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H XP_009770731.1 150 YICSVCGRKCKTNLDLKKHFKQlH 173 89*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 7.2E-7 | 70 | 140 | IPR029060 | PIN domain-like |
SMART | SM00355 | 0.0051 | 150 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.907 | 150 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 173 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 1.56E-11 | 164 | 304 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 7.2E-7 | 235 | 305 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MLMSTTIFSS IHLKTSSFFP TPLPTKHQNL TFSFKPNSPI APIKWHHINS CAAGQEIDME 60 RTKEGLYTAK PKKVVILWDL DNKPPRGPPY EAAMCLKKVA QSFGEVVDMS AYANRHAFIH 120 LPQWVVEQRR ERRHLDVLER KGAVTPSEPY ICSVCGRKCK TNLDLKKHFK QLHERERQKK 180 LSRMRSLKGK KRQKFKERHV DGNYKYIEAA RSLITPKVGY GLAAELRRAG VFVKTVADKP 240 QAADWALKKQ MQHSMTRGID WLFLVSDDSD FCDMLSRAKE ANLGTVVVGD MDRALGRHAD 300 LWIPWNGVEN GEIKEKDLVL KLERRRESWG RSNARFSVSE FDGGISGEGT SVGTLMDDIV 360 EKLELSSTRI SAFSEGEEDE DEDVEELDEE DWLRARLDQP GDDKYDTEDS LLDSEDEEGD 420 YLLDSDDEDP GQMV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770731.1 | 0.0 | PREDICTED: uncharacterized protein LOC104221366 | ||||
TrEMBL | A0A1U7W0K1 | 0.0 | A0A1U7W0K1_NICSY; uncharacterized protein LOC104221366 | ||||
STRING | XP_009770731.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12268 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-163 | C2H2-like zinc finger protein |