PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009770189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 1056aa MW: 118435 Da PI: 6.7724 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1e-07 | 328 | 421 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqky 47 r+ W++eE e l+++vkq + +W+ +a++ gR++ +c+srw+++ XP_009770189.1 328 RKEWSKEERENLAKGVKQQFQEmllqrsvdllsnkdgrsgesgdldgliasirdvvitpetmrlflpkvNWDQVAAMYIPGRSGAECQSRWLNW 421 789****************999*****************************************************99888************98 PP | |||||||
2 | Myb_DNA-binding | 37.8 | 4.3e-12 | 481 | 525 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r WT+eEd +l av+ +G +W ++a+ + gR + qc +rw k XP_009770189.1 481 RREWTEEEDIKLCAAVETFGESNWQLVASVIE-GRAGTQCSNRWIK 525 678*****************************.***********87 PP | |||||||
3 | Myb_DNA-binding | 40.6 | 6.1e-13 | 535 | 592 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 g+W+++Ed++l+ av ++ ++ Wk+Ia++++ gRt qc++rw + XP_009770189.1 535 GKWSADEDKRLKVAVMLFYPKswrnigqsvpcrapIWKKIAQYVP-GRTHVQCRERWVN 592 89*****************99************************.***********87 PP | |||||||
4 | Myb_DNA-binding | 47.2 | 5e-15 | 602 | 644 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd++l+ a+ ++G W+++a++++ Rt++qc+ rw + XP_009770189.1 602 EWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWKVL 644 7*****************99.*********.9**********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.946 | 323 | 422 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.2E-6 | 327 | 424 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 328 | 361 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00477 | 385 | 421 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 397 | 443 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.61E-12 | 403 | 472 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.829 | 423 | 475 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.16 | 427 | 477 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-8 | 444 | 481 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-17 | 461 | 533 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.611 | 476 | 531 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-11 | 480 | 529 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-15 | 482 | 531 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.56E-9 | 483 | 527 | No hit | No description |
Pfam | PF13921 | 1.8E-11 | 484 | 545 | No hit | No description |
PROSITE profile | PS50090 | 8.792 | 529 | 594 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-13 | 532 | 584 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-11 | 533 | 596 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-7 | 536 | 594 | No hit | No description |
SuperFamily | SSF46689 | 7.19E-25 | 574 | 646 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-21 | 585 | 642 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.708 | 595 | 649 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-14 | 599 | 647 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.14E-12 | 602 | 645 | No hit | No description |
Pfam | PF00249 | 5.1E-14 | 602 | 643 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1056 aa Download sequence Send to blast |
MAFDDDEDFS GSDSDDGFQE DMEALKKACL LSGKETDDLQ PSCSTGDIGG GHVIGADDVT 60 PSGTDVDDVD DDIELVRSIQ ERFALSTELR EPLTLEPLCS LPPPGSEGDD DFETLRAIQR 120 RFAAYDDDSG KGRKESPLNN FEQVGVTNIT SEKESSNNFF VERTNAGEGF PACVDGTTQI 180 SDGCSNEIAS SQNLIEWHDS GAENTAVSVN SFCFPKSAQA FVEAIKKNRS CQKIIRDKMM 240 QIEARMEELK KLKERVKILK GFQIASRKRM GRALSQKRDA RIQLISLPKQ KCSSKGKKLS 300 AIHYGPPENS HVASVREALT HFAVSLSRKE WSKEERENLA KGVKQQFQEM LLQRSVDLLS 360 NKDGRSGESG DLDGLIASIR DVVITPETMR LFLPKVNWDQ VAAMYIPGRS GAECQSRWLN 420 WEDPLIKHEE WDILEEKALL HAVQRNEMSN WIDISASLGV CRTPFQCLSH YQRSLNASIL 480 RREWTEEEDI KLCAAVETFG ESNWQLVASV IEGRAGTQCS NRWIKSLHPT RKRCGKWSAD 540 EDKRLKVAVM LFYPKSWRNI GQSVPCRAPI WKKIAQYVPG RTHVQCRERW VNSLDPSLKL 600 DEWTEEEDLK LKSAIDEHGY SWSKVAACVP PRTDNQCRRR WKVLFPDEVP MLQEAKKIRR 660 EAFISNFVDR EEERPALKPN DIVPTHKLSY RAGCGTASAN KRRKLMPRAT RDDSAPRCDA 720 LCELERRHLE ESEGPESSDL LNNSSLSSRD QEIERISDGE EAFEQGYHDS TKNKRPSKLH 780 PRRTKKLAPN DMVPEVSASS KVESTTAVNN ICKNRRRTSS LVKKKRTIAS QESSSSLPNL 840 SSSMTVVEEV DSHVQDSGKT MNIMDKRHST SGYDDSCVNS EGPPLSRPHL DKGTADLDVG 900 ENRVWENAST IGPQESSLYF QKNAVVCTDE NARQLKASGC HKLNKCNQLK SDGGFSLNNL 960 CETADDCMTL ASFILKSRAK RRSLSSAKVA KLRPDIAQSK DVADDHSSRS CISGCHDGVE 1020 KTMTQECTSS NQIPRAEVAD DMPLSLVMGR VKRRQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-25 | 431 | 641 | 9 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-25 | 431 | 641 | 9 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-108 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770189.1 | 0.0 | PREDICTED: uncharacterized protein LOC104220923 isoform X2 | ||||
Refseq | XP_016482192.1 | 0.0 | PREDICTED: uncharacterized protein LOC107803091 isoform X2 | ||||
TrEMBL | A0A1S4AZS6 | 0.0 | A0A1S4AZS6_TOBAC; uncharacterized protein LOC107803091 isoform X2 | ||||
TrEMBL | A0A1U7W6B3 | 0.0 | A0A1U7W6B3_NICSY; uncharacterized protein LOC104220923 isoform X2 | ||||
STRING | XP_009770188.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-165 | myb domain protein 4r1 |