PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770188.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1058aa    MW: 118676 Da    PI: 6.7724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07330423147
                      TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqky 47 
                      r+ W++eE e l+++vkq   +                                               +W+ +a++   gR++ +c+srw+++
   XP_009770188.1 330 RKEWSKEERENLAKGVKQQFQEmllqrsvdllsnkdgrsgesgdldgliasirdvvitpetmrlflpkvNWDQVAAMYIPGRSGAECQSRWLNW 423
                      789****************999*****************************************************99888************98 PP
2Myb_DNA-binding37.84.3e-12483527146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r  WT+eEd +l  av+ +G  +W ++a+ +  gR + qc +rw k
   XP_009770188.1 483 RREWTEEEDIKLCAAVETFGESNWQLVASVIE-GRAGTQCSNRWIK 527
                      678*****************************.***********87 PP
3Myb_DNA-binding40.66.1e-13537594246
                      SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                      g+W+++Ed++l+ av ++ ++               Wk+Ia++++ gRt  qc++rw +
   XP_009770188.1 537 GKWSADEDKRLKVAVMLFYPKswrnigqsvpcrapIWKKIAQYVP-GRTHVQCRERWVN 594
                      89*****************99************************.***********87 PP
4Myb_DNA-binding47.25e-15604646347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT+eEd++l+ a+ ++G   W+++a++++  Rt++qc+ rw  +
   XP_009770188.1 604 EWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWKVL 646
                      7*****************99.*********.9**********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.946325424IPR017877Myb-like domain
SMARTSM007173.2E-6329426IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-6330363IPR009057Homeodomain-like
CDDcd001670.00478387423No hitNo description
Gene3DG3DSA:1.10.10.601.1E-5399445IPR009057Homeodomain-like
SuperFamilySSF466891.61E-12405474IPR009057Homeodomain-like
PROSITE profilePS500906.829425477IPR017877Myb-like domain
SMARTSM007170.16429479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-8446483IPR009057Homeodomain-like
SuperFamilySSF466891.59E-17463535IPR009057Homeodomain-like
PROSITE profilePS5129418.611478533IPR017930Myb domain
SMARTSM007173.3E-11482531IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-15484533IPR009057Homeodomain-like
CDDcd001672.54E-9485529No hitNo description
PfamPF139211.8E-11486547No hitNo description
PROSITE profilePS500908.792531596IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-13534586IPR009057Homeodomain-like
SMARTSM007179.2E-11535598IPR001005SANT/Myb domain
CDDcd001671.13E-7538596No hitNo description
SuperFamilySSF466897.19E-25576648IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-21587644IPR009057Homeodomain-like
PROSITE profilePS5129422.708597651IPR017930Myb domain
SMARTSM007172.7E-14601649IPR001005SANT/Myb domain
PfamPF002495.1E-14604645IPR001005SANT/Myb domain
CDDcd001674.11E-12604647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1058 aa     Download sequence    Send to blast
MAFDDDEDFS GSDSDDGFQE DMEALKKACL LSGKETDDLQ PSCSTGDIGG GHVIGADDVT  60
PSGTDVDDVD DDIELVRSIQ ERFALSTELR EPLTLEPLCS LPPPGSEGDD DFETLRAIQR  120
RFAAYDDDSG KGRKESPLNN FEQVGVTNIT SEKESSNNFF VERTNAGEGF PACVDGTTQI  180
SDGCSNEIAS SQNLIEWHDS GAENTAVSVN SFCFPKSAQA FVEAIKKNRS CQKIIRDKMM  240
QIEARMEELK KLKERVKILK GFQIASRKRM GRALSQKRDA RIQLISLPKQ KCSSKLQGKK  300
LSAIHYGPPE NSHVASVREA LTHFAVSLSR KEWSKEEREN LAKGVKQQFQ EMLLQRSVDL  360
LSNKDGRSGE SGDLDGLIAS IRDVVITPET MRLFLPKVNW DQVAAMYIPG RSGAECQSRW  420
LNWEDPLIKH EEWDILEEKA LLHAVQRNEM SNWIDISASL GVCRTPFQCL SHYQRSLNAS  480
ILRREWTEEE DIKLCAAVET FGESNWQLVA SVIEGRAGTQ CSNRWIKSLH PTRKRCGKWS  540
ADEDKRLKVA VMLFYPKSWR NIGQSVPCRA PIWKKIAQYV PGRTHVQCRE RWVNSLDPSL  600
KLDEWTEEED LKLKSAIDEH GYSWSKVAAC VPPRTDNQCR RRWKVLFPDE VPMLQEAKKI  660
RREAFISNFV DREEERPALK PNDIVPTHKL SYRAGCGTAS ANKRRKLMPR ATRDDSAPRC  720
DALCELERRH LEESEGPESS DLLNNSSLSS RDQEIERISD GEEAFEQGYH DSTKNKRPSK  780
LHPRRTKKLA PNDMVPEVSA SSKVESTTAV NNICKNRRRT SSLVKKKRTI ASQESSSSLP  840
NLSSSMTVVE EVDSHVQDSG KTMNIMDKRH STSGYDDSCV NSEGPPLSRP HLDKGTADLD  900
VGENRVWENA STIGPQESSL YFQKNAVVCT DENARQLKAS GCHKLNKCNQ LKSDGGFSLN  960
NLCETADDCM TLASFILKSR AKRRSLSSAK VAKLRPDIAQ SKDVADDHSS RSCISGCHDG  1020
VEKTMTQECT SSNQIPRAEV ADDMPLSLVM GRVKRRQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-254336439155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-254336439155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-108HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770188.10.0PREDICTED: uncharacterized protein LOC104220923 isoform X1
TrEMBLA0A1U7VUY70.0A0A1U7VUY7_NICSY; uncharacterized protein LOC104220923 isoform X1
STRINGXP_009770188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-165myb domain protein 4r1