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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009769739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 731aa MW: 79567.4 Da PI: 6.4395 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.8 | 9.7e-33 | 314 | 371 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k XP_009769739.1 314 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 371 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.1 | 7.4e-33 | 528 | 586 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ XP_009769739.1 528 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 586 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-29 | 311 | 372 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-26 | 312 | 372 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.0E-37 | 313 | 371 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.399 | 314 | 372 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-25 | 314 | 370 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-37 | 513 | 588 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 520 | 588 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.733 | 523 | 588 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-38 | 528 | 587 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-25 | 529 | 586 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MGGFDDHAAI MGDWMPPSPS PRTFFSSLLG DDIGSRSTFE FPNENKRGNL ASEPQEHVGN 60 SDGAQTDAMT VKSDQKMSSR GGLLERMAAR AGFNAPKLNT ESLRPADLSQ NQGVRSPYLT 120 IPPGLSPTSL LESPVFLSNS LVQPSPTTGK FQFASGIESR NSTFMMEDPD KRKENALESI 180 NSSSFSFKPV PETASSLFPG ATSRSWLQVN SSNISQQCFP NIKVSVHSQN SLLSHCMEAT 240 QMQNQNEKGL NQSSDFPRFS AEKDVRDSNV TPDSTNFQTV GSNVEHSPPL DEPQDEEIDQ 300 RVGGDPNVVG APAEDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCPVKKKV ERSHEGHITE 360 IIYKGAHNHP KPPPNRRSAL GSTNSLGELQ LDGAEQGVSG SNGDLGRANI QKAPDAGGLD 420 WRNNNLDVTS SAHLGSAYCN GSASFPVQNN TQLESGGAVD VSSTFSNDED EDDRGTHGSV 480 SQGYDGEGDE SESKRRKLET YSTDMSGATR AIREPRVVVQ TTSEVDILDD GYRWRKYGQK 540 VVKGNPNPRS YYKCTSAGCN VRKHVERASH DLKSVITTYE GKHNHDVPAA RNSSHVNSGT 600 SNTLPAPVTA PPAQSHLHRP EPAQLQNAMA RFDRQPSLGS FGPSPGFSYG MNQQSLASLA 660 MAGFHPNQSK SQQQVPVHSY LGQPRPMHDG GFMFPKEEPK AEPMSDPGLD LSNGSSIYQQ 720 FMSRLPLGPQ M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-37 | 314 | 589 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-37 | 314 | 589 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB711132 | 0.0 | AB711132.1 Nicotiana benthamiana NbWRKY11 mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769736.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_016498819.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X1 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1S4CCX0 | 0.0 | A0A1S4CCX0_TOBAC; probable WRKY transcription factor 2 isoform X1 | ||||
TrEMBL | A0A1U7VXP3 | 0.0 | A0A1U7VXP3_NICSY; probable WRKY transcription factor 2 isoform X1 | ||||
STRING | XP_009769736.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-171 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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