PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769505.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 350aa    MW: 38181.1 Da    PI: 8.6715
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-121335527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                    +C+++++tGtCk+G++CkF+H++
  XP_009769505.1 13 ECQYYLKTGTCKFGATCKFHHPR 35
                    7********************96 PP
2zf-CCCH34.63.2e-115881427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                     +C +++rt +Ck+G++CkF+H++
  XP_009769505.1 58 NECTYYMRTAQCKFGSTCKFHHPE 81
                    68********************96 PP
3zf-CCCH375.8e-12212236327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tG Ck+G+ C+F+H++
  XP_009769505.1 212 QPECQFYMKTGDCKFGAVCRFHHPR 236
                     799********************96 PP
4zf-CCCH36.58.3e-12258282327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f++r+G+Ck+G++CkF H++
  XP_009769505.1 258 EPMCIFYSRYGICKFGPSCKFDHPM 282
                     689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.92836IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5835IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-61237IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-101335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-51435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9865482IPR000571Zinc finger, CCCH-type
SMARTSM003560.00185481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-65582IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-95781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-46080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911209237IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5209236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6212239IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8212236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5215239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295255283IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4255282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5258282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4260280IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8261282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNGEYPERIG QLECQYYLKT GTCKFGATCK FHHPRDKAGI AGRVTLNVLG YPLRPNENEC  60
TYYMRTAQCK FGSTCKFHHP EPSNMMVSSR GSPVYPPGPS STTPGQMSYP LSRASFISGA  120
RWQGSSSYAP LPVLQGVVSF PGFTYNGQLG SVSSAEGQQQ TAGNSQVYGS SRSSDKATMG  180
SEGMNSSYRV SSLPVGYYAL QGENVFPERV GQPECQFYMK TGDCKFGAVC RFHHPRERLL  240
PPPDCLLSPI GLPLRAGEPM CIFYSRYGIC KFGPSCKFDH PMRVFTYNIS ASSSTDDPSV  300
RRLLGSSSGT GALTLTSEGI VEAASTTPRR LSLLETRKMP PGDNNFDREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769504.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3
SwissprotQ9SWF91e-174ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7W4F00.0A0A1U7W4F0_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X3
STRINGXP_009769498.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-130zinc finger protein 1