PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769504.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 381aa    MW: 41522 Da    PI: 8.5589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-124466527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                    +C+++++tGtCk+G++CkF+H++
  XP_009769504.1 44 ECQYYLKTGTCKFGATCKFHHPR 66
                    7********************96 PP
2zf-CCCH34.53.6e-1189112427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C +++rt +Ck+G++CkF+H++
  XP_009769504.1  89 NECTYYMRTAQCKFGSTCKFHHPE 112
                     68********************96 PP
3zf-CCCH36.86.5e-12243267327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tG Ck+G+ C+F+H++
  XP_009769504.1 243 QPECQFYMKTGDCKFGAVCRFHHPR 267
                     799********************96 PP
4zf-CCCH36.39.2e-12289313327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f++r+G+Ck+G++CkF H++
  XP_009769504.1 289 EPMCIFYSRYGICKFGPSCKFDHPM 313
                     689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.923967IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-53966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-64368IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-94466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-54566IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.98685113IPR000571Zinc finger, CCCH-type
SMARTSM003560.001885112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-686113IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-988112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-491111IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5240267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911240268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6243270IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8243267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5246270IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295286314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5289313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4291311IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8292313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDESSSPWIF LCPKDLPLCH RLSAKALAAA SMNGEYPERI GQLECQYYLK TGTCKFGATC  60
KFHHPRDKAG IAGRVTLNVL GYPLRPNENE CTYYMRTAQC KFGSTCKFHH PEPSNMMVSS  120
RGSPVYPPGP SSTTPGQMSY PLSRASFISG ARWQGSSSYA PLPVLQGVVS FPGFTYNGQL  180
GSVSSAEGQQ QTAGNSQVYG SSRSSDKATM GSEGMNSSYR VSSLPVGYYA LQGENVFPER  240
VGQPECQFYM KTGDCKFGAV CRFHHPRERL LPPPDCLLSP IGLPLRAGEP MCIFYSRYGI  300
CKFGPSCKFD HPMRVFTYNI SASSSTDDPS VRRLLGSSSG TGALTLTSEG IVEAASTTPR  360
RLSLLETRKM PPGDNNFDRE G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769504.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3
SwissprotQ9SWF91e-176ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7W4F00.0A0A1U7W4F0_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X3
STRINGXP_009769498.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-132zinc finger protein 1