PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768780.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 260aa    MW: 29312.9 Da    PI: 4.991
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.52.3e-38101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+l++l++++ + dam+s+++e++++ r PvyG+v+ i +l+qql+ + +el
  XP_009768780.1  10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILRQLDDDDqKADAMKSIIFESDMWERFPVYGCVEYICHLRQQLQLALEEL 104
                     7************************************************655549***************************************9 PP

          DUF260  95 allkee 100
                     +++ ++
  XP_009768780.1 105 HYVYAQ 110
                     998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0749111IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-3710106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILRQLDD  60
DDQKADAMKS IIFESDMWER FPVYGCVEYI CHLRQQLQLA LEELHYVYAQ LALYREQQQQ  120
QLALQRGVTS EIPFVNGISM GPFFTSEGEC SEGGPKTNLL GSDSLFGHNS SITFAASDHV  180
IFGFGVRDDH QRDISHEYEC LINPFNNIMA DDRQSYVETK EACDSSSESS WKDTQSLENL  240
SQNELRNAAA CLSLTSRVTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2421144114LOB family transfactor Ramosa2.1
5ly0_B4e-2421144114LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768780.10.0PREDICTED: LOB domain-containing protein 11-like
RefseqXP_016512749.10.0PREDICTED: LOB domain-containing protein 11-like
TrEMBLA0A1S4DHL20.0A0A1S4DHL2_TOBAC; LOB domain-containing protein 11-like
TrEMBLA0A1U7W3D90.0A0A1U7W3D9_NICSY; LOB domain-containing protein 11-like
STRINGXP_009768780.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-37LOB domain-containing protein 27