PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767947.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 28205 Da PI: 8.6382 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_009767947.1 102 FSCNYCQRKFYSSQALGGHQNAH 124 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.66E-6 | 99 | 129 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVTLKRDVHL HPKGGQDALS SSSSSSCQDE RNYHKQEEDH QNAIEDIRLR GKSNGDGDGD 60 DDESDHRKNN QELNLLERLN TNKSPICNEN DPTSDGAEPR VFSCNYCQRK FYSSQALGGH 120 QNAHKRERTL AKRAGQRPIG HHLFNFTPAA AAAAFGHHPY LRVQHQNNYN FVSSMSTLPL 180 NGANNQNNSL GIQAHSMIHK TTNSSGNWSN RQFIKHQPGV GKLSVIPKGN IHFIPQEENK 240 SDLQKIDLSL KL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767947.1 | 0.0 | PREDICTED: zinc finger protein 1-like | ||||
Refseq | XP_016490632.1 | 0.0 | PREDICTED: zinc finger protein 1-like | ||||
TrEMBL | A0A1S4BP17 | 0.0 | A0A1S4BP17_TOBAC; zinc finger protein 1-like | ||||
TrEMBL | A0A1U7VIQ6 | 0.0 | A0A1U7VIQ6_NICSY; zinc finger protein 1-like | ||||
STRING | XP_009767947.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15739 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 4e-32 | zinc-finger protein 1 |