PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009767697.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 92aa MW: 10330.7 Da PI: 8.5214

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009767697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.3	4.8e-07	19	59	14	54
HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 d+i + ++L+ l+P+ + + +s K++ + +L+++++YI+sL XP_009767697.1 19 DQIADLVSKLQLLIPEiR-NRRSDKVTASKVLQETCNYIRSL 59 6899999*******77.89*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-8	3	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.004	5	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-8	19	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-4	19	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MSSRRSRSGQ SAVSRISDDQ IADLVSKLQL LIPEIRNRRS DKVTASKVLQ ETCNYIRSLH 60 REVEDLSERL SVLLDSTESD SAQGAIIRSL LM

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767697.1	2e-57	PREDICTED: transcription factor PRE6-like
Refseq	XP_016511145.1	2e-57	PREDICTED: transcription factor PRE6-like
Swissprot	Q9LJX1	6e-36	PRE5_ARATH; Transcription factor PRE5
TrEMBL	A0A1S4DCH8	4e-56	A0A1S4DCH8_TOBAC; transcription factor PRE6-like
TrEMBL	A0A1U7VHZ3	4e-56	A0A1U7VHZ3_NICSY; transcription factor PRE6-like
STRING	XP_009767697.1	6e-57	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	3e-38	bHLH family protein