PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 349aa MW: 39786.8 Da PI: 4.8273 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.6 | 7.1e-11 | 280 | 320 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_009767140.1 280 RRRREKINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 320 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.301 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-14 | 273 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 275 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-12 | 276 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.85E-11 | 279 | 324 | No hit | No description |
Pfam | PF00010 | 3.0E-8 | 280 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MESVGAFFDE ECQSLGRMFF TENSDFMFQL HCDNPSDLTW HDEEANKNVT DNTNTQGSFF 60 SPPSRSHNGN LEYFCQENSN DSRGSDGMFF LNNASHEYLQ QYNGVTNLFQ VTNNHTDESP 120 DFYMMGHNNL ENSSVNPSFQ DDDFMKEMVS LKEDIGKQML LKRKFHEVEL QSGAEDQKLE 180 DTKNPKKKSR GSREGPTNKK SVQPKVRKNI QINNEEVGDQ QEINNAAKCK SGQSTSSCSS 240 EEDSNACQEL NTNSDTKSNL NSKTRASRGT ATDPQSLYAR RRREKINERL KILQNLVPNG 300 TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD MWMYAPIAYN GMEMDLSHT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 284 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767140.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
TrEMBL | A0A1U7VYQ5 | 0.0 | A0A1U7VYQ5_NICSY; transcription factor bHLH84-like | ||||
STRING | XP_009767140.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA639 | 22 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 6e-52 | bHLH family protein |