PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 804aa MW: 92304.8 Da PI: 7.6879 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.4 | 1e-27 | 67 | 153 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ ++++t+Cka+++vk+++dgkw+++++ ++HnHel p XP_009767068.1 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDAG---TSRRPSVKKTDCKASMHVKRKRDGKWYIHEFIKDHNHELLP 153 9***************************************999888...7788899*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-25 | 67 | 153 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.2E-26 | 273 | 365 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.076 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.2E-6 | 561 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.1E-8 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MVDHGVVVQN SLQVIGDMVD AVDNTCHNRD GGVATSPKRS ITGVEGNADL EPRDGIEFES 60 HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD AGTSRRPSVK 120 KTDCKASMHV KRKRDGKWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ LDRGRCLSLE EGDAQVMLEY FMHIQRENPY 240 FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY TKSNEKMPFV LFVGVNHHCQ 300 PMLLGCALVA DETKPTFVWL MKTWLRAVGG QAPKVMITDQ DKSLKAAIEE VFPCSRHCFA 360 LWHVLERIPD ILAHVVKQHE NFMEKFSKCI FKSVTDEQFD LRWWKMVSRF ELQENEWIHT 420 LYEERRKWVP AYMRGSFFAG MSTAQRSESI SSFFDKYIHK KISLKEFMRQ YGMILQNRYE 480 EEAVADFEIL QKHPALKSPS PWEKQMSTIY THAIFRKFQV EVLGVVGCHP KKEAENGETV 540 TFRVNDCEKN ENFMVTWNEA KSDVSCSCLL FEYKGFLCRH AMNVLQICGL PSIPSQYILK 600 RWTKDAKNRQ LLLEGTERIT RVQRYNDLCR RAIELGEEGS LSEESYGIAF RVLDEALKDC 660 VNVNNRSSTL TECSSSAIGL RDLEQDTQGI HATKTSRKKI TNKKRKVHTE PEAAIVEAQD 720 SLQQMDNLSV GGMTLNGYYG TQQNVQGLGQ LNTIAPGHDG FFGSQQSIPG LGHLDFRQPS 780 FSYGLQEEPS LRASQLHGNS ARHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767068.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 | ||||
Refseq | XP_016495829.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X3 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1S4C435 | 0.0 | A0A1S4C435_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X3 | ||||
TrEMBL | A0A1U7VL37 | 0.0 | A0A1U7VL37_NICSY; protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 | ||||
STRING | XP_009767065.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |