 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009766178.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 341aa MW: 37686.6 Da PI: 8.1336 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009766178.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.7 | 1.7e-17 | 182 | 236 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
XP_009766178.1 182 RKKLRLTKEQSAFLEESFKEHNTLNPKQKFALAKQLKLRPRQVEVWFQNRRARTK 236
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 125.4 | 2.5e-40 | 182 | 272 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eLr +lk
XP_009766178.1 182 RKKLRLTKEQSAFLEESFKEHNTLNPKQKFALAKQLKLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCETLTEENRRLQKELQELR-ALK 272
69*************************************************************************************9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MELALSLGGD TQKSFSFLKK STNNSSSHEE LLTSSNKDLR FCMGLGKSNT THELDENNGG 60
RKILHLDLLP LSAVPLNQIM PSQIPFPWLS QNIAAEPGLT NGPAGKVLDM NRRPIVLEEE 120
AEEGADLSSP NSNSGVSSFQ MEFSSIYRNG NSRSLIGKRD HSEAGDTERG VSDEDENNGL 180
ARKKLRLTKE QSAFLEESFK EHNTLNPKQK FALAKQLKLR PRQVEVWFQN RRARTKLKQT 240
ELDCEYLKRC CETLTEENRR LQKELQELRA LKSSQPLYMQ LPATTLTMCP SCERVATTTA 300
AAVPTAAAAT SATATNTTLS LAKPNLFPFP PAQVHAPQAA S
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 230 | 238 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC244286 | 2e-56 | AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence. |
| GenBank | HG975449 | 2e-56 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
| GenBank | HG975522 | 2e-56 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
