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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009765927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 440aa MW: 50051.7 Da PI: 9.6378 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.7 | 6.3e-26 | 31 | 118 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y eYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k+ ++ +++r+etrtgC a++ +++++dgk+++t+++++HnH+l XP_009765927.1 31 CYIEYAAALGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRG-QTVQKHRKETRTGCLAHIIISRQSDGKFRITSFQEKHNHPLD 118 799****************************************999.99999***********************************97 PP | |||||||
2 | FAR1 | 84.3 | 2e-26 | 175 | 262 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFs rk++ +ksk +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a++ ++++++g++++t++e++HnH+l XP_009765927.1 175 WYNEYAAAMGFSARKEYANKSKVQGYVTSRKFTCHKEGYRSKDKRD-RTVQKHRKETRTGCLAHIIISRQSNGTFRITSFEEKHNHPLD 262 7******************************************999.99999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.3E-23 | 31 | 119 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.0E-23 | 175 | 263 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEITSSESQG GFNVPIKLGM EFDSDEQAYE CYIEYAAALG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRGQTVQ KHRKETRTGC LAHIIISRQS DGKFRITSFQ EKHNHPLDPS 120 SLSHILPSQR KIKVAQAHEV TARFMEITYS ESQGGFNVPI KLGMEFDSDE HAYEWYNEYA 180 AAMGFSARKE YANKSKVQGY VTSRKFTCHK EGYRSKDKRD RTVQKHRKET RTGCLAHIII 240 SRQSNGTFRI TSFEEKHNHP LDPSLSDMLP SERKIKVAQA HKVSVRYKHL CEIFAQISSE 300 ASESKEGYEL AAKCANELVA KLKHVKKRNE SHEDSAPSKS IENELNETIF IDNTNATKLT 360 GLKRKQPTHR SNTRTMSFME MTKSKNNTSL LKSPQCQTDK KLDHLPSLLS CQVTCPSLSD 420 ASMTMGVPEG SCLKDHPMKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765927.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_009765928.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_016460557.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2 | ||||
TrEMBL | A0A1S3Z8M5 | 0.0 | A0A1S3Z8M5_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X2 | ||||
TrEMBL | A0A1U7VCX0 | 0.0 | A0A1U7VCX0_NICSY; protein FAR1-RELATED SEQUENCE 7-like | ||||
STRING | XP_009765927.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 6e-31 | FAR1-related sequence 7 |