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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009765228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 263aa MW: 29870.9 Da PI: 8.2885 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.8e-11 | 129 | 151 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++ +tG+C yGd CkF H+ XP_009765228.1 129 DICKDYKETGYCGYGDACKFLHD 151 58********************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.23E-9 | 123 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 125 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-11 | 126 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-9 | 129 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 4.4E-13 | 186 | 244 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 2.4E-8 | 202 | 244 | No hit | No description |
SuperFamily | SSF57850 | 4.89E-13 | 202 | 245 | No hit | No description |
CDD | cd00162 | 1.44E-6 | 203 | 244 | No hit | No description |
PROSITE profile | PS50089 | 10.217 | 203 | 241 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 7.9E-4 | 203 | 240 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 218 | 227 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MKKKPAIAGF STGPPKCNKA PLFYFESPKE ITVQNDSRAT ASLETETEFS KDARAIRERV 60 LKLGEEALKG KSKSSADDKL YKGMNQYTDY KAGLRREHTI SSEKACGAHG PLRASAHIRV 120 STRFDYHPDI CKDYKETGYC GYGDACKFLH DWGDYKAGWQ LEKEWEEAAK ERKRKLAMGM 180 LNEDDEDAEK SDEDDDDSLP FACFICRQPF VDPIVTKCKH YFCAHCALKH HAKNKKCFVC 240 NQPTLGIFNT ALEIRKRMAT QGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 3e-63 | 36 | 258 | 113 | 317 | RING finger protein 113A |
5z58_M | 3e-63 | 36 | 258 | 113 | 317 | RING finger protein 113A |
6ff4_t | 3e-63 | 36 | 258 | 113 | 317 | RING finger protein 113A |
6ff7_t | 3e-63 | 36 | 258 | 113 | 317 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765228.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X1 | ||||
Swissprot | Q8GX84 | 1e-130 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A1U7VFT1 | 0.0 | A0A1U7VFT1_NICSY; zinc finger CCCH domain-containing protein 1-like isoform X1 | ||||
STRING | XP_009765228.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4403 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-122 | C3H family protein |