PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009764981.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 676aa MW: 76294.6 Da PI: 5.5938 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.2 | 6.4e-23 | 150 | 250 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt+sd ++ l++ +k a+++ ++k +++l+++d++g++W++k+ ++++++r++lt+GW Fv +++L +gD vvF +++ XP_009764981.1 150 FCKALTTSDIKSNWGLSVHRKDANKCfppldmaQEK--PTQELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWGAFVTSKKLLAGDLVVFL--RDE 240 99****************************964433..4459************************************************..569 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++l+v+++r XP_009764981.1 241 TGKLHVGIRR 250 999*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-35 | 143 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-27 | 145 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.73E-19 | 149 | 250 | No hit | No description |
SMART | SM01019 | 1.9E-16 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-20 | 150 | 250 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.59 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-5 | 275 | 336 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MEGMFWFIVG CSQAWGESSL LPQNSHGSVG AIIQSGMDSR TTTVPSSPKD TMSGSSYSSS 60 GVREDKMREA SIRWFGHVKR RGTDAPVRRC ERLALEGQRR GEAGRRSIGV EHDTEEVYAE 120 TILLPNQEQN EPSTPEFCPL EPPRPQYQSF CKALTTSDIK SNWGLSVHRK DANKCFPPLD 180 MAQEKPTQEL IVNDLQGNEW RFKHVFQGQP RRHLLTNGWG AFVTSKKLLA GDLVVFLRDE 240 TGKLHVGIRR LSYQCNSVGS STFSRQSMEG VLAVASHAFA TRSLFSVYYK PCHNRSSQFI 300 MSLSNYFEGG NHGPGVGTIS RTQQSSLDSH VKRTSGMDQM SFPQGQHMTN LLLEEDQYMQ 360 DSEAISISAR PTMMPLEIEQ QSVESLNNIH HIEDNVLQPH TAVARENNEG FIPNETVAIQ 420 AQDENFDELF KETDFPDFVN TSLDTITLDW DSDLRSTIQD FDEWLEEQEE TNPPGLQTCS 480 EDHSRQTSSI LEQPTSSQVM SISSTPSRIP YKGPGRGDEQ VPWGRYQVAR RCLPILNRVV 540 SRYPDSLVNF KVASSIFQSL HLEILAELVY FLDNLTVMNL SKDQFNVAGQ HLWDLKLSGI 600 ELGWLEKRLA HIDGAFSMEN LLQRRQAVTL RMGETLATFR QLDEELGRIN KELHELSLKV 660 GPNPPMRFHP VLEGLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-61 | 110 | 336 | 84 | 310 | Auxin response factor 1 |
4ldw_A | 1e-61 | 110 | 336 | 84 | 310 | Auxin response factor 1 |
4ldw_B | 1e-61 | 110 | 336 | 84 | 310 | Auxin response factor 1 |
4ldx_A | 1e-61 | 110 | 336 | 84 | 310 | Auxin response factor 1 |
4ldx_B | 1e-61 | 110 | 336 | 84 | 310 | Auxin response factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB084669 | 0.0 | AB084669.1 Nicotiana tabacum NtWAF mRNA for hypothetical protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764978.1 | 0.0 | PREDICTED: uncharacterized protein LOC104216589 isoform X2 | ||||
Refseq | XP_009764979.1 | 0.0 | PREDICTED: uncharacterized protein LOC104216589 isoform X2 | ||||
Refseq | XP_009764981.1 | 0.0 | PREDICTED: uncharacterized protein LOC104216589 isoform X2 | ||||
Refseq | XP_016487495.1 | 0.0 | PREDICTED: uncharacterized protein LOC107807599 isoform X2 | ||||
Refseq | XP_016487496.1 | 0.0 | PREDICTED: uncharacterized protein LOC107807599 isoform X2 | ||||
Refseq | XP_016487497.1 | 0.0 | PREDICTED: uncharacterized protein LOC107807599 isoform X2 | ||||
TrEMBL | A0A1S4BF88 | 0.0 | A0A1S4BF88_TOBAC; Auxin response factor | ||||
TrEMBL | A0A1U7VJ90 | 0.0 | A0A1U7VJ90_NICSY; Auxin response factor | ||||
STRING | XP_009764975.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.1 | 2e-66 | auxin response factor 11 |