PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009764035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 50451.8 Da PI: 6.3916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.3 | 7.7e-05 | 347 | 384 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +++l+ + +K + a++L +A+eYIk L XP_009764035.1 347 RKEKLGDRITAIQQLVSPF-----GKTDTASVLHEAIEYIKFL 384 5566777888888888887.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.433 | 335 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.04E-4 | 345 | 388 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-11 | 345 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 349 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD 60 DSVVLQELPK HHQQPHDSTL QMLGIGLSSS SISSTPDWNH TMMHGNERAD SSYPTILQED 120 LNSSLNYRQE TGVDCSHELG KNFSTITEDS SNNSYKQVNH QDFTLGMNPI TSSTNTDQST 180 VISSSFPMNS SFSNYPSALL QTLFDNDPPP HQQQPQQQSL FTNNNQPMNF PVSLNYRPNL 240 NDHFSPSLPK FPPLLRPSLP KQTPSSFPFT DPTSLNNMRG NLLPSMHSQL LLQSPTFHEK 300 SSVPNNSAKS DVEGFRESRA KKSGNSEPAF KRPRMETPSP LPTFKVRKEK LGDRITAIQQ 360 LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKTGS PPLHQQSADK VKEQEGSKQD 420 LRSRGLCLVP ISSTFPVATE TTTDFWTPNF GGTFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 8e-57 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764035.1 | 0.0 | PREDICTED: transcription factor bHLH112-like | ||||
Refseq | XP_016490372.1 | 0.0 | PREDICTED: transcription factor bHLH112-like | ||||
TrEMBL | A0A1S4BNE2 | 0.0 | A0A1S4BNE2_TOBAC; transcription factor bHLH112-like | ||||
TrEMBL | A0A1U7VQ73 | 0.0 | A0A1U7VQ73_NICSY; transcription factor bHLH112-like | ||||
STRING | XP_009764035.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 5e-55 | bHLH family protein |