PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009763792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 289aa MW: 31934.7 Da PI: 8.8159 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.3 | 7.6e-33 | 74 | 129 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++rY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e+ XP_009763792.1 74 SRARYRECLKNHAASIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKEQP 129 5789*************************9.999********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.7E-30 | 76 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-22 | 77 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-31 | 77 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.961 | 78 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.02E-16 | 219 | 279 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 220 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.4E-28 | 221 | 278 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MALAGEDKEM RMQGSLGYHS LDQGNQHHHQ PNNNNLQPQQ DNEKSSSGGT GAAPPVVVPY 60 SSGGSTNNKF KITSRARYRE CLKNHAASIG GNVTDGCGEF MPSGEEGTLE ALKCAACNCH 120 RNFHRKEQPN VDNNNAGIMV VHPLQLPQPL PSPLPSMNHH HQHGRSVWST MPPQPVKMAF 180 GGSGGGGSGA TDSSSEELNF NTYQQATSVP PQPQPPFMLA KKRFRTKFTQ DQKEKMLEFA 240 EKLGWRIPRE DDTEVQRFCS QVGVKRQVFK VWMHNNKNPS AKKNPQEEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-24 | 222 | 279 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763792.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Refseq | XP_016490581.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9ZPW7 | 3e-61 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A1S4BNW1 | 0.0 | A0A1S4BNW1_TOBAC; zinc-finger homeodomain protein 5-like | ||||
TrEMBL | A0A1U7V6K4 | 0.0 | A0A1U7V6K4_NICSY; zinc-finger homeodomain protein 5-like | ||||
STRING | XP_009763792.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 8e-59 | homeobox protein 33 |