PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762879.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 505aa    MW: 55413.1 Da    PI: 7.1085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.41.9e-16321368355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn+ Er+RRdriN+++ +L++l+P +      K +Ka++L +++eY+k+Lq
  XP_009762879.1 321 ATHNQSERKRRDRINQRMKTLQKLVPYS-----SKTNKASMLDEVIEYLKQLQ 368
                     69*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.517318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-19321392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-14321368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-18322381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-17322372No hitNo description
SMARTSM003534.6E-17324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNQCVPGWSL ENSPHQNLAL SHSNSNNSFV TNVPSLNYEV AELTWENGQL GMHGLGYKPL  60
VNSSPIKYTW DNKSHVGGTL ESIVNQATGI SHDHQKSAID GGGDREEDLV DWFDKCLADT  120
QATTTAVSVA MDALVPSFAH TRNSHQGEQQ PPTHVSGITT CLSGGSTHMT SCSGVVNRTD  180
GEMLCANIGA AYEEISKDLE ITTYFGKREV KNLICGPLIR RTGLYEQHSD AVLSSMADQS  240
VSQRDNIDTS ERDLGAEKFT STSMSSVEKT SSVKQCNSKT VDEHDSTCHN RSQRPEAGDE  300
DDKKKRSKIS SFSTKRSRAA ATHNQSERKR RDRINQRMKT LQKLVPYSSK TNKASMLDEV  360
IEYLKQLQAQ VQAMSRMNNN MSPMMLPNMA IMQQQQQQHL QMSMMASMGM GMGMAGFNGA  420
LSHPNITAMP SLLHPTASFM PIPTGVSPGS GDRNINAAST SSLVPDPLAA FRTCQSQPMN  480
MDAYSRIAAL YQQYLQPPAN FVFKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762879.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A1U7VKK70.0A0A1U7VKK7_NICSY; transcription factor UNE10-like
STRINGXP_009762879.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-43bHLH family protein