PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762809.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1099aa    MW: 121215 Da    PI: 6.4731
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_009762809.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySIQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 225
                     99*****************************8666555.59************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_009762809.1 226 QQLLLGIRRA 235
                     889****997 PP
2Auxin_resp119.33.1e-39260343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ k+++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_009762809.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSTYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343
                     79******************************999879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-43124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-40126249IPR015300DNA-binding pseudobarrel domain
CDDcd100177.03E-19133225No hitNo description
SMARTSM010195.4E-23134236IPR003340B3 DNA binding domain
PfamPF023623.8E-20134235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857134236IPR003340B3 DNA binding domain
PfamPF065072.2E-34260343IPR010525Auxin response factor
PROSITE profilePS5174528.1399881072IPR000270PB1 domain
PfamPF023091.4E-69891073IPR033389AUX/IAA domain
SuperFamilySSF542778.53E-710061066No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1099 aa     Download sequence    Send to blast
MKTPGNIAGA QQAAANVNPA EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKTNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSIQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKSTYSSQVS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDCSDLDGL FKRTMPWLGD DFGMKDPQGL  420
PGLSLVQWMN MQQNPSLANS MQQPNYLHSL SGPVLQNVGG GADLSRQLGL PAAPQLPQHN  480
TLQFGTQRPN QQGQMPAATL SPVGSIVQSQ QQQLSDISQQ PRQNLINHSM PTNQVQAQLL  540
QAQSLVQSQN VLQQQQSLQN QLQRNLPQQQ QIMNQTQQQS FMPSQPSDPL NQQMHFSDNQ  600
LQLQLLQKLH QQQQSLLAQQ SVLQQPQLGP IQDQQKQLLD VSQNFSRSLA TSQMLDMSQT  660
TSTSTSLSQS QVVQQQMTSQ SHFRFSQPNQ QSKLHQQPGI LPELPGQVGQ NLPPTTNQFS  720
TNCSSLLTGA AGGGQSVVTD DIPSCSTSPS TNNCQNAVQP SMNGRMHRGT AAGDEATQSS  780
VPLLNSSGFE AMSTNSNLVK DLQHKSDVKP SVNISKSPNQ GFLAPQTYLN TAGPHMDYLD  840
SSSSATSVCF SQNDAQLQQT TNPLSFNNQP VIFRDSQDGE VQGDPRNSVA FGSNMDNQLG  900
LPMMPDPLVT NSLMDSRKDL SNNISSGGGM LSSYENPKEA QPELSSSMVS QSFGVPDMAF  960
NSIDSTINDG SFMNRGAWAP PPQVPRLRTY TKVYKRGAVG RSIDIARYSG YEDLKQDLAR  1020
RFGIEGQLED RQRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG  1080
DFGNSLQNQA CSSSDGGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1692336447388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305440.0HM130544.1 Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762809.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A1U7VKE00.0A0A1U7VKE0_NICSY; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19