PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009762040.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 183aa MW: 20586.5 Da PI: 8.34

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009762040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	53	8.2e-17	55	94	2	40
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaa 40 + ++YkeCl NhAa++Gg+a+DGCgEfmps +e ++ ++ XP_009762040.1 55 KMMKYKECLENHAAAMGGNATDGCGEFMPSGEEGiNQEDG 94 5789*************************95554445555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.1E-13	57	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-11	57	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.1E-15	58	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	18.298	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.14E-16	109	168	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-26	110	170	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.4E-24	114	168	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEVPNEEGEM AMPINSAYGH GHMIHHDPAP QNNHIIPSSQ IITSKNGPPI SSNKKMMKYK 60 ECLENHAAAM GGNATDGCGE FMPSGEEGIN QEDGIINGGC GVMARPLNYQ QLVKKRFRTK 120 FSQEQKEKML NFAEKIGWKM QKQEEAMVQQ FCQQVGVKRR LLKVWMHNLA KKNSNDINTE 180 SQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-21	115	168	18	71	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762040.1	1e-135	PREDICTED: zinc-finger homeodomain protein 3-like isoform X2
Swissprot	Q9SB61	1e-30	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1U7VJM2	1e-134	A0A1U7VJM2_NICSY; zinc-finger homeodomain protein 3-like isoform X2
STRING	XP_009762039.1	4e-62	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-33	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]