PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762029.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 676aa    MW: 75475.2 Da    PI: 4.4781
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.33.1e-4941311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtd el+++yLk+k+ gk+l++ e+i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat++gyWk+tgkd++++
  XP_009762029.1   4 LPPGFRFHPTDVELIMYYLKRKIMGKQLHF-EAITELNIYKFSPWDLPdKcCYKSKDLEWYFFCPRERKYASGARMNRATETGYWKTTGKDRSIT 97 
                     79**************************99.89***************6545666777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ vg  ktLvf++g+ p+g++tdWv+hey++
  XP_009762029.1  98 Y-DEKIVGSVKTLVFHQGHPPRGQRTDWVIHEYKF 131
                     *.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-582154IPR003441NAC domain
PROSITE profilePS5100554.9214154IPR003441NAC domain
PfamPF023651.4E-245130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MARLPPGFRF HPTDVELIMY YLKRKIMGKQ LHFEAITELN IYKFSPWDLP DKCCYKSKDL  60
EWYFFCPRER KYASGARMNR ATETGYWKTT GKDRSITYDE KIVGSVKTLV FHQGHPPRGQ  120
RTDWVIHEYK FEDKGLADAG FAQDSYVLCK VFQKSGPGPK NGAQYGAPFK EADWEDDEIP  180
AEPCTSDVLC APPQRPDNKN YSIETSMINP GSTSGWPSSQ RSLSLSSIQR MPLDEPNIEV  240
PGEPRPSNVS PINWMPSDKL GDVGVTGESS PSNIFSALPV LPEKQSLIDT SMINSGPGPS  300
NTRLCTNKMP LDEQDDEIIG LLAHFTEDTT LLSAGNENNQ NLENFNPDMN ALPDPFADGN  360
DIFDGLGNIE SWEGLGQSRS DLSANWRANY SLNPMILPED AAYMELNDLE IPLDHSAGTI  420
ETGRLALSNL CAPYKSNIDV QEFCFGNNSL GINQDFCENQ LPMLPESYTQ QVNYSDMVYN  480
YYQNNVSQGY NAATNFSVSS YKQPKENSRL AAQNMERGVQ QRKFYLSIFA LCGGSLILVK  540
AEVILGIDGC TNDALSVILG DVFYSSIFAL CGGSFIFVKA EVTLEIDGCT DEALSVILGG  600
PSCVFTCQSN VVKADISIQV LEPLRFGFSL ALCFSHLKKL WYNLFWEFYE FIFLKILLNQ  660
LQVIIQVVVV SSSFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-44415415168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762029.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_009762030.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1U7VJL10.0A0A1U7VJL1_NICSY; NAC domain-containing protein 78-like
STRINGXP_009762029.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-82NAC domain containing protein 103