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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009761686.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
MYB |
| Protein Properties |
Length: 330aa MW: 37533.9 Da PI: 7.2222 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009761686.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 62.8 | 6.7e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WTteEd++l+d+++++G+g+W+t ++ g+ R++k+c++rw +yl
XP_009761686.1 14 KGPWTTEEDQKLIDYIQKHGSGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++ eE+e +++++ lG++ W++Ia +++ gRt++++k++w+++
XP_009761686.1 67 RGKFSFEEEETIIHLHSILGNK-WSAIAGRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MGRTPCCDKN GLKKGPWTTE EDQKLIDYIQ KHGSGNWRTL PKNAGLQRCG KSCRLRWTNY 60
LRPDIKRGKF SFEEEETIIH LHSILGNKWS AIAGRLPGRT DNEIKNYWNT HIRKKLLRMG 120
IDPVTHSPRL DLLDFSSIFN PSLYNSSQVN LSRLLGVQTL VNPEILKLAT SLFSSHHQNQ 180
NQNFLLPSDF QENQLFNSHF QNQLSQFVQS SQIQTPIQNI PSCTALNTTP SVPFYSDTQV 240
MQQPNVEQFS SNISNFSSQN CQLSEWQNFT FESLLSTLST PSSSPTSLNS NSTCINNSST 300
TISEEERESY CSSILNFDIS NSLDVNHDFL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975449 | 2e-50 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615] - Zhu L,Guo J,Ma Z,Wang J,Zhou C
Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
Biomolecules, 2019.
[PMID:29880735]
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