 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009761611.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
NAC |
| Protein Properties |
Length: 347aa MW: 40158.8 Da PI: 5.2074 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009761611.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.1 | 4.8e-55 | 11 | 140 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL+ k ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v
XP_009761611.1 11 VPPGFRFHPTDEELVGYYLRKKIAAQKIDL-DVIRDIDLYRIEPWDLQdKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATLAGFWKATGRDKAV 104
69****************************.9***************943432233667************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
++ k++l+g++ktLvfy+grap+g+k+dW+mheyrle
XP_009761611.1 105 YD-KSQLIGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 140
**.999*****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:1990110 | Biological Process | callus formation |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MMDTNESSSC VPPGFRFHPT DEELVGYYLR KKIAAQKIDL DVIRDIDLYR IEPWDLQDKC 60
RIGYEEQNEW YFFSHKDKKY PTGTRTNRAT LAGFWKATGR DKAVYDKSQL IGMRKTLVFY 120
RGRAPNGQKS DWIMHEYRLE SEENSPPQEE GWVVCRAFKK RNTGQAKINN EEGWESNYFY 180
EESSGVSSIV DPLEYIPRQP PTGNFMSQNL LCKQEIEANN NSSFNFLHSD QFVQLPQLES 240
PSLPLMKRPS SMSLVSENNR DEDDQQITKR SKINKNVKDR VTDWRALDKF VAYQLSHDDD 300
GVSSYEPHNG SDLGMLLLQS GREEGPKLDD LLSSTSNRDI GICIFDK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-50 | 11 | 165 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-50 | 11 | 165 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-50 | 11 | 165 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-50 | 11 | 165 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-50 | 11 | 165 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 1e-50 | 11 | 165 | 17 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
