PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009761488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 271aa MW: 30810.9 Da PI: 8.9761 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.2 | 1.6e-06 | 113 | 132 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ XP_009761488.1 113 FSCHICHKTFNRYNNLQMHM 132 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.23E-5 | 108 | 135 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 113 | 132 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.55 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 113 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 160 | 192 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 150 | 197 | 217 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
MERLYLASSS SVENQIEPFD FFAEKTQNAF EFLSLSQPSE KEIRLSNDQE NPNSCHWPDK 60 EDDVTVALHI GLPNFSKAST KIPTGHNKGD ANIAATNYWI PTPSQILVGF TQFSCHICHK 120 TFNRYNNLQM HMWGHGSQYR KGPESLKGTQ PRAMLGIPCY CCEEGCKNNK NHPRAKPLKD 180 FRTLQTHYKR KHGTKRFACR KCGKCLAVKG DWRTHEKNCG KRWLCICGSD FKHKRSLKDH 240 IASFGEGHGP CPPNSFEGVE VQRAGTYSVF V |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761488.1 | 0.0 | PREDICTED: protein TRANSPARENT TESTA 1 | ||||
Refseq | XP_016490796.1 | 0.0 | PREDICTED: protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q8VWG3 | 1e-105 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A1S4BPL1 | 0.0 | A0A1S4BPL1_TOBAC; protein TRANSPARENT TESTA 1-like | ||||
TrEMBL | A0A1U7V531 | 0.0 | A0A1U7V531_NICSY; protein TRANSPARENT TESTA 1 | ||||
STRING | XP_009761488.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13264 | 15 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34790.1 | 1e-108 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|