PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761268.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25640.9 Da    PI: 8.795
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.9e-172061142
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    k+i+n+  r+vtfsk r g++KKA+EL++L +ae+a+++ s 
  XP_009761268.1 20 KPIDNQNSRHVTFSKQRLGLFKKASELCILSGAEIAILVQSL 61
                    68*************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.5821260IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-201272IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-201385IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-101434IPR002100Transcription factor, MADS-box
PfamPF003198.0E-172269IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-103449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNTTINTMKK TQGRRKIAIK PIDNQNSRHV TFSKQRLGLF KKASELCILS GAEIAILVQS  60
LKRQRLFAFG HPNADAVIDR YLTGKSFSSS SIVDKLNVQQ NNQYYSQSCR ELEAEKKKKE  120
IIENSKIVNN NNNNNEGFWW NESFDDMRIE ELEEIMGALE GLKKKITMRA DELSMINGSS  180
VLPSNSTMNN NIARFGAEDQ FSNQAAIDYC SSIVPYQFNH PGDGQF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761268.11e-168PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U7V4E81e-167A0A1U7V4E8_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009761268.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62