PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 89aa MW: 10390.8 Da PI: 8.7026

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009761204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.4	2.5e-11	3	47	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +++ +a +++ ++ +W+ Iar++g g+++++++ ++ XP_009761204.1 3 NWTAKQNKKFEEALALYDKDtcdRWNNIARCVG-GKSAEEVRRHYE 47 7******************************.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	12.421	1	54	IPR017884	SANT domain
SMART	SM00717	2.0E-7	1	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-5	2	56	IPR009057	Homeodomain-like
CDD	cd00167	4.79E-8	3	50	No hit	No description
Pfam	PF00249	9.3E-9	3	47	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.64E-13	3	57	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MANWTAKQNK KFEEALALYD KDTCDRWNNI ARCVGGKSAE EVRRHYELLV KDIMQIENDQ 60 VPLPNYRTAG SDGRSYANEQ RLMKNLKLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-30	4	89	11	93	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761204.1	8e-62	PREDICTED: protein RADIALIS-like 1
Refseq	XP_016481457.1	8e-62	PREDICTED: protein RADIALIS-like 1
Swissprot	F4JVB8	1e-34	RADL1_ARATH; Protein RADIALIS-like 1
TrEMBL	A0A1S4AXQ9	2e-60	A0A1S4AXQ9_TOBAC; protein RADIALIS-like 1
TrEMBL	A0A1U7VFU9	2e-60	A0A1U7VFU9_NICSY; protein RADIALIS-like 1
STRING	XP_009761204.1	3e-61	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	4e-37	RAD-like 1

Publications ? help Back to Top
Zhang M, et al. ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development. Plant Physiol., 2013. 163(2): p. 713-20 [PMID:23922269]