PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 1094aa MW: 124219 Da PI: 9.3553 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.3e-12 | 27 | 116 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ + ++++rl++p +fa+++ ++ ++ + le ++g++Wev++ ++g++ l+ GW++F + + g f++F ++ rs f +v+ XP_009760929.1 27 FFKII--LSQHERSRLRIPEDFASRYCKNMLNP--VYLEVPTGEVWEVEV--VHSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 113 67777..78889999***********5454444..***************..999999**************************999999..999 PP EE- CS B3 96 vfr 98 +f+ XP_009760929.1 114 IFD 116 987 PP | |||||||
2 | B3 | 40.5 | 4.8e-13 | 280 | 360 | 4 | 90 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + ps+v++ +l+++ kfa+++ +++ + l+l+ + sW+vk+++ + +++ Wk Fv +n+Lk gD++vF++++ + XP_009760929.1 280 FMQPSYVFSPFNLSMSLKFARKYFLENYR--NLVLRVPGRGSWSVKCTFGTTNAKIF----WKAFVMDNKLKPGDVCVFEVIKGAKL 360 5789*******************887545..7***************8866655554....*******************8764433 PP | |||||||
3 | B3 | 47 | 4.5e-15 | 537 | 626 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ps+v+k +l ++ +f++++ ++ + +l+ + sW+v++ + ++ +++GWk Fv +n+Lk gD++vF++++ ++ + v++f XP_009760929.1 537 FMQPSYVSKPYNLNISATFIRKYFRDEYS--NFVLRVPGRGSWSVEC--FMGTSKAQIRSGWKAFVLDNKLKHGDVCVFEVIKVTKLLMDVTIF 626 6789*******************777555..69**************..334444559**********************99877776777776 PP | |||||||
4 | B3 | 34.7 | 3.1e-11 | 800 | 888 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ps+v++ rl + a+++ + +++ l+l + sW+vk+ k++ ++ + Wk Fv +n+Lk gD++vF+l++ ++ l v++fr+ XP_009760929.1 800 PSYVSTPYRLDITFLLARKYLWE-KCG-FLVLHVPGRGSWSVKYVLGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRT 888 66666666666666667666322.233.588899999*******999999999999..*********************88777788888885 PP | |||||||
5 | B3 | 49.6 | 7.3e-16 | 999 | 1085 | 7 | 94 |
.-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ps+v++ +l++ + a+++ k++ +++l+++s rsW vk+ + + lt+GWkeFv +n+Lkeg ++vF++++rs+ ++v XP_009760929.1 999 PSYVSSAsgpMQLSITLPIARKFFATKHS--DVILQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNDLKEGHICVFERVSRSKLLFNV 1085 44444445567899999999999766444..8***************..55555677***********************88776664444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-18 | 19 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-17 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-10 | 25 | 116 | No hit | No description |
PROSITE profile | PS50863 | 11.166 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-8 | 27 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-8 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-16 | 270 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-15 | 270 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.01E-15 | 275 | 368 | No hit | No description |
SMART | SM01019 | 2.8E-9 | 276 | 370 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.305 | 277 | 370 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 279 | 359 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-21 | 526 | 629 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-19 | 527 | 627 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.73E-15 | 532 | 627 | No hit | No description |
SMART | SM01019 | 6.8E-11 | 533 | 629 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.773 | 534 | 629 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-12 | 536 | 626 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-16 | 786 | 887 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-16 | 787 | 887 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.123 | 794 | 889 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-6 | 797 | 889 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.00E-13 | 798 | 887 | No hit | No description |
Pfam | PF02362 | 1.5E-8 | 800 | 887 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-22 | 985 | 1089 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-18 | 988 | 1089 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.31E-14 | 991 | 1088 | No hit | No description |
PROSITE profile | PS50863 | 12.478 | 996 | 1091 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-9 | 996 | 1091 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-14 | 1003 | 1087 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1094 aa Download sequence Send to blast |
MAAKPQLQNG EGSSHWKSST NITQPKFFKI ILSQHERSRL RIPEDFASRY CKNMLNPVYL 60 EVPTGEVWEV EVVHSQGQIC LGIGWQDFSD FYSISCGHFL MFGYNARSHF NVTIFDLSAS 120 EIEYPYSSAH GIHTPISYSH ETRHAPERDQ SESDDSVEIL EGIPRSQKAN PIIPDMVENS 180 VENLDHCPLG QSSKRQRQEG DTEDDVFVDM HIKRMKVEKL QEDVASFTRE GQKSSEGCCT 240 HMLQSKIVYD ENKTVMDKER AIAYQRAKGF KSKNPFVISF MQPSYVFSPF NLSMSLKFAR 300 KYFLENYRNL VLRVPGRGSW SVKCTFGTTN AKIFWKAFVM DNKLKPGDVC VFEVIKGAKL 360 LMDITIFPAA GSTPMHKIAG EVPWVSDKSV PFSQSRIVQT KNLKQRRGGV CGFNSKVKEH 420 GEGIGIEHSF EILGHCPLGQ YRKITRLERD AEDDVPFDTH TKNIKVETSQ EDVALPSFRK 480 TKNFEFLFEE SGESCRMHTQ QTTIVCGKNK TVMDKERAMA YQRAKAFKSK NPFIISFMQP 540 SYVSKPYNLN ISATFIRKYF RDEYSNFVLR VPGRGSWSVE CFMGTSKAQI RSGWKAFVLD 600 NKLKHGDVCV FEVIKVTKLL MDVTIFPATG STPMLKIAGE VTGVSDSKRK IIKTDIYVPC 660 SPPKVVHTNR LKQRRGEEHD EGTGIESSVE ILGHCPLGHD SKIKRLEVET EDDVSIDIHA 720 KNIKVANTQE DVASPSFTRK TKNFEFLYEE SGESCRMDKQ QSKMVYDKNT TVLDKERTVA 780 YQRAKDFKSE NPYVMYFMQP SYVSTPYRLD ITFLLARKYL WEKCGFLVLH VPGRGSWSVK 840 YVLGKSKTKI CFYWKAFVLD NKLKFGDVCV FELIKGTKPI LDVTIFRTAE SKPVHKIDGK 900 LSGVSDCKNK TIKTENSVPC SQSKIVRSRK LNLEKRQNGN SDGFTSKTKE ELSEDAGKHV 960 QQSKSSCKGS AVAKEMVLAY QRAKAFTSEN PFFICFMQPS YVSSASGPMQ LSITLPIARK 1020 FFATKHSDVI LQNSSKRSWA VKCSLGTVNA KLTSGWKEFV LDNDLKEGHI CVFERVSRSK 1080 LLFNVIIFTS AEGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-15 | 507 | 626 | 22 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-15 | 507 | 626 | 22 | 140 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760929.1 | 0.0 | PREDICTED: uncharacterized protein LOC104213184 isoform X2 | ||||
TrEMBL | A0A1U7VF33 | 0.0 | A0A1U7VF33_NICSY; uncharacterized protein LOC104213184 isoform X2 | ||||
STRING | XP_009760928.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-32 | B3 family protein |