PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760894.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 362aa    MW: 39624 Da    PI: 9.3454
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-14100190186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  +++Liea  +   +l+rg+l++++W+ev++++     + ++  r+ +qCk++++ l+k+yk +k++ ++ + +  s +p+f+ l+
  XP_009760894.1 100 CWSEAATHTLIEAWGSHYLELKRGNLRQKHWQEVANAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSHGRYASPWPFFNGLD 190
                     7*************************************999987778889**********************9999999999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2598192No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MCRRPTSILL TLPSLLLLLN LIPPPPFTKF NSVVAVSPST PMSDDDLVAS PSSNNNSPSP  60
PPSPSSPPPS TNNELVNSLP PSTIPPASTR PAAFPAREDC WSEAATHTLI EAWGSHYLEL  120
KRGNLRQKHW QEVANAVNAL HGHTKKQYRT DIQCKNRIDT LKKKYKIEKA RVSQSHGRYA  180
SPWPFFNGLD ALIGDNFKPS PAPVTVASRR KTPPMLLPPP SAVPVGPRSK RPAAAMEDAV  240
SRRNFSAMAA AAAAAAVSEE SDEEEESETS SPAAISLTGA RKEESGALAE GCSRLAEAIG  300
RFAEIYERVE DAKQRQMVEL EKQRMQFAKD LEIQRMKLIM ESQVQLEKLK RAKSNSQADG  360
YL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723910.0AB072391.1 Nicotiana tabacum NtSIP1 mRNA for 6b-interacting protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760894.10.0PREDICTED: uncharacterized protein LOC104213156
RefseqXP_016507452.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1S4D2040.0A0A1S4D204_TOBAC; trihelix transcription factor ASIL2-like
TrEMBLA0A1U7VEZ50.0A0A1U7VEZ5_NICSY; uncharacterized protein LOC104213156
STRINGXP_009760894.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.14e-72sequence-specific DNA binding transcription factors